Add cursor-based pagination to GET /analyze/batch and update /jobs defaults

Add a new GET /analyze/batch endpoint that returns stored analysis results
with cursor-based pagination (default limit 50, max 200). Also update the
existing /jobs endpoint defaults from limit=10/max=100 to limit=50/max=200
for consistency.

The database layer gains a list_analyses() method with cursor support using
(timestamp, id) ordering, matching the existing list_jobs() pattern.

Includes tests for pagination behavior, boundary limits, cursor forwarding,
company name filtering, and empty result sets.

Closes leeworks-agents/SPARC#1669

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

.gitea/workflows/build.yaml

@@ -15,7 +15,7 @@ jobs:
       - name: Install system dependencies
         shell: sh
         run: |
-          apk add --no-cache git python3 py3-pip gcc musl-dev libpq-dev python3-dev
+          apt-get update && apt-get install -y git python3 python3-pip gcc libpq-dev python3-dev
 
       - name: Checkout code
         shell: sh
@@ -26,7 +26,7 @@ jobs:
       - name: Install Python dependencies
         shell: sh
         run: |
-          pip3 install --break-system-packages -r requirements.txt ruff
+          pip3 install -r requirements.txt ruff
 
       - name: Run ruff linter
         shell: sh
@@ -36,7 +36,7 @@ jobs:
       - name: Install Node.js and check TypeScript types
         shell: sh
         run: |
-          apk add --no-cache nodejs npm
+          apt-get install -y nodejs npm
           cd frontend
           npm ci
           npm run generate:local
@@ -56,6 +56,7 @@ jobs:
           JWT_SECRET: "test-secret-for-ci"
           APP_ENV: "development"
         run: |
+          pip3 install pytest
           python3 -m pytest tests/ -v --tb=short -x
 
   build-api:
@@ -65,7 +66,7 @@ jobs:
       - name: Install dependencies
         shell: sh
         run: |
-          apk add --no-cache git docker-cli
+          apt-get update && apt-get install -y git docker.io
 
       - name: Checkout code
         shell: sh
@@ -137,7 +138,7 @@ jobs:
       - name: Install dependencies
         shell: sh
         run: |
-          apk add --no-cache git docker-cli
+           apt-get update && apt-get install -y git docker.io
 
       - name: Checkout code
         shell: sh

.gitea/workflows/test.yaml

@@ -16,7 +16,7 @@ jobs:
       - name: Install system dependencies
         shell: sh
         run: |
-          apk add --no-cache git python3 py3-pip gcc musl-dev libpq-dev python3-dev
+          apt-get update && apt-get install -y git python3 python3-pip gcc libpq-dev python3-dev
 
       - name: Checkout code
         shell: sh
@@ -27,7 +27,7 @@ jobs:
       - name: Install Python dependencies
         shell: sh
         run: |
-          pip3 install --break-system-packages -r requirements.txt ruff
+          pip3 install -r requirements.txt ruff
 
       - name: Run ruff linter
         shell: sh
@@ -37,7 +37,7 @@ jobs:
       - name: Install Node.js and frontend dependencies
         shell: sh
         run: |
-          apk add --no-cache nodejs npm
+          apt-get install -y nodejs npm
           cd frontend && npm ci
 
       - name: Verify generated API types are up to date

ROADMAP.md

@@ -7,86 +7,131 @@ Semiconductor Patent & Analytics Report Core -- development priorities.
 SPARC is a patent analysis platform with a working end-to-end pipeline:
 Python/FastAPI backend, React/TypeScript frontend, PostgreSQL for persistence
 and caching, Docker Compose for local development, and Gitea Actions CI/CD for
-image builds. Core features (patent retrieval via SerpAPI, PDF parsing, LLM
+image builds and testing. Core features include patent retrieval via SerpAPI,
-analysis via OpenRouter/Claude, batch processing, JWT authentication, analytics
+PDF parsing, LLM analysis via OpenRouter (multi-model: Claude, GPT-4o, Gemini,
-dashboard) are all implemented and functional.
+Llama), batch processing, JWT authentication, analytics dashboard with patent
+trend charts, scheduled recurring analysis with alerting, webhook notifications
+(Slack/Discord), CSV and PDF export, S3/MinIO storage, side-by-side company
+comparison, and dark mode.
+
+---
+
+## Completed
+
+Items that have been implemented and merged into main.
+
+### Security hardening
+
+- ~~Rotate default JWT secret.~~ Startup check refuses to start with the
+  default secret in non-development environments.
+- ~~CORS allow-origins are hardcoded.~~ Allowed origins are now configurable
+  via environment variable.
+- ~~Database credentials in docker-compose.yml.~~ Compose references `.env`
+  for sensitive values.
+
+### Error handling and resilience
+
+- ~~`get_db_client()` creates a new `DatabaseClient` on every call.~~ Refactored
+  to a shared pooled singleton initialized at startup.
+- ~~No rate limiting on auth endpoints.~~ Rate limiting middleware added to
+  `/auth/login` and `/auth/register`.
+
+### Test coverage
+
+- ~~API tests bypass authentication.~~ JWT auth integration tests added (33
+  cases covering registration, login, protected routes, token refresh, and
+  admin-only endpoints).
+- ~~No test stage in CI.~~ Gitea Actions workflow now runs `pytest` and gates
+  the build.
+- ~~No linting or type checking in CI.~~ `ruff` (Python) and `tsc --noEmit`
+  (TypeScript) added to CI pipeline.
+
+### Backend
+
+- ~~Add structured logging.~~ Python `logging` module used throughout.
+- ~~Make LLM model configurable.~~ `MODEL` environment variable accepted;
+  multi-model support with per-analysis selection (GPT-4o, Gemini, Claude,
+  Llama).
+- ~~SERP cache TTL hardcoded.~~ `SERP_CACHE_TTL_HOURS` exposed as env var.
+- ~~Patent PDF storage.~~ S3/MinIO object storage backend added alongside
+  local filesystem. Volume mount requirement documented.
+- ~~`analyze_single_patent` assumes local file.~~ Auto-download from cached
+  metadata link integrated.
+- ~~`Patent.patent_id` typed as `int`.~~ Fixed to `str`.
+
+### Frontend
+
+- ~~No loading/error states.~~ Skeleton loaders and error states added to
+  Batch and Analytics pages.
+- ~~No dark mode.~~ Full dark mode support with theme-aware chart colors.
+- ~~Missing lockfile.~~ `package-lock.json` committed.
+
+### Features (formerly P3)
+
+- ~~Export analysis reports.~~ CSV and PDF export endpoints implemented.
+- ~~Comparison view.~~ Side-by-side company patent portfolio comparison added.
+- ~~Scheduled/recurring analysis.~~ APScheduler-based periodic re-analysis
+  with configurable interval and change-threshold alerting.
+- ~~Webhook/notification support.~~ Slack, Discord, and generic HTTP POST
+  webhooks with retry logic.
+- ~~Multi-model support.~~ Model picker in Analysis and Batch pages; backend
+  allow-list validation.
+- ~~Patent trend charts.~~ Filing frequency and category distribution
+  visualizations added to Analytics page.
+- ~~OpenAPI client generation.~~ TypeScript API client auto-generated from
+  FastAPI spec with CI freshness check.
 
 ---
 
 ## P1 -- High Priority
 
-These items address correctness, security, and reliability gaps that should be
+These items address correctness, reliability, and coverage gaps that should be
 resolved before broader production use.
 
-### Security hardening
+### Resilience
 
-- **Rotate default JWT secret.** `auth.py` ships a fallback
+- **`_jobs` dict is in-memory only.** Job state is lost on API restart.
-  `sparc-secret-key-change-in-production` that will be used if `JWT_SECRET` is
+  Persist job status in PostgreSQL or Redis so async batch results survive
-  unset. Add a startup check that refuses to start with the default secret in
+  restarts.
-  non-development environments.
-- **CORS allow-origins are hardcoded.** `api.py` only permits
-  `localhost:3000` and `localhost:5173`. Make the allowed origins configurable
-  via environment variable so the dashboard works when deployed behind a real
-  domain.
-- **Database credentials in docker-compose.yml.** The compose file embeds
-  `postgres:postgres` in plain text. Reference a `.env` file or Docker secrets
-  instead.
 
-### Error handling and resilience
+### Test coverage gaps
 
-- **`get_db_client()` in `auth.py` creates a new `DatabaseClient` on every
+- **Export endpoint tests.** The CSV and PDF export endpoints (`/export/`)
-  call.** This bypasses the connection pool and can exhaust database
+  lack test coverage. Add tests covering auth, success, 404, and edge cases.
-  connections under load. Refactor to share a single pooled client.
+  *(Issue #1655)*
-- **`_jobs` dict is in-memory only.** Job state is lost on API restart. Persist
+- **Tracked company admin endpoint tests.** The `/admin/tracked` CRUD
-  job status in PostgreSQL or Redis so async batch results survive restarts.
+  endpoints and scheduler integration lack test coverage. *(Issue #1656)*
-- **No rate limiting on auth endpoints.** `/auth/login` and `/auth/register`
-  are unprotected against brute-force or abuse. Add rate limiting middleware.
-
-### Test coverage for auth and admin
-
-- The existing API tests (`tests/test_api.py`) bypass authentication entirely.
-  Add tests that exercise the JWT flow: registration, login, protected-route
-  access, token refresh, and admin-only endpoints.
 
 ---
 
 ## P2 -- Medium Priority
 
-Improvements to usability, performance, and developer experience.
+Improvements to reliability, test coverage, and code quality.
 
-### Backend
+### Test coverage
 
-- **Add structured logging.** Replace `print()` calls throughout `analyzer.py`,
+- **Webhook integration tests.** The retry logic, Slack/Discord payload
-  `serp_api.py`, and `llm.py` with Python `logging` so log levels and
+  format, and multi-URL dispatch in `webhooks.py` need test coverage.
-  formatting are consistent.
+  *(Issue #1657)*
-- **Make LLM model configurable.** `llm.py` hardcodes
+- **S3/MinIO storage backend tests.** `storage.py` has local filesystem tests
-  `anthropic/claude-3.5-sonnet`. Accept a `MODEL` environment variable to allow
+  but no unit tests for the S3 backend (read, write, exists, delete,
-  switching models without code changes.
+  error handling). *(Issue #1660)*
-- **SERP cache TTL is hardcoded to 24 hours.** Expose `SERP_CACHE_TTL_HOURS`
+- **`analyze_single_patent` auto-download path tests.** The auto-download
-  as an environment variable in `config.py`.
+  fallback (cache lookup, PDF download, FileNotFoundError) in
-- **Patent PDF storage.** PDFs are saved to a local `patents/` directory. For
+  `analyzer.py` lacks test coverage. *(Issue #1661)*
-  containerized deployments, consider object storage (S3/MinIO) or at minimum
-  document the volume mount requirement more prominently.
-- **`analyze_single_patent` assumes local file path.** The method constructs
-  `patents/{patent_id}.pdf` and reads from disk, but does not download the PDF
-  first. Either integrate the download step or document the prerequisite.
-- **`Patent.patent_id` typed as `int` in `types.py` but used as `str`
-  everywhere.** Fix the type annotation to `str`.
 
-### Frontend
+### Code quality
 
-- **No loading/error states on several pages.** The Batch and Analytics pages
+- **Scheduler creates its own DatabaseClient.** `scheduler.py` bypasses the
-  would benefit from skeleton loaders and user-friendly error messages.
+  application-level pooled client, creating a new connection on every tick.
-- **No dark mode.** Tailwind is configured but no dark variant is applied.
+  Refactor to use `get_db_client()`. *(Issue #1658)*
-- **Missing `package-lock.json` or `pnpm-lock.yaml`.** The frontend has no
-  lockfile committed, leading to non-reproducible builds.
 
-### CI/CD
+### API improvements
 
-- **No test stage in the Gitea Actions workflow.** `build.yaml` builds and
+- **API pagination.** The `/analyze/batch` and `/jobs` endpoints could benefit
-  pushes images but never runs `pytest`. Add a test job that gates the build.
+  from cursor-based pagination for large result sets.
-- **No linting or type checking.** Add `ruff` (Python) and `tsc --noEmit`
+- **Request validation improvements.** Add stricter input validation for
-  (TypeScript) to CI.
+  company names (disallow special characters, enforce length limits).
 
 ---
 
@@ -94,23 +139,20 @@ Improvements to usability, performance, and developer experience.
 
 Lower-urgency enhancements and future features.
 
-- **Export analysis reports.** Allow users to download analysis results as PDF
+- **Historical analysis diffing.** Show what changed between two analysis runs
-  or CSV from the dashboard.
+  for the same company, highlighting new patents and score shifts.
-- **Comparison view.** Side-by-side comparison of two companies' patent
+- **Patent classification tagging.** Automatically tag patents by technology
-  portfolios.
+  domain (AI, semiconductors, materials science) using LLM classification.
-- **Scheduled/recurring analysis.** Periodically re-analyze tracked companies
+- **User-level API keys.** Allow users to generate personal API keys for
-  and alert on significant changes.
+  programmatic access without JWT token refresh.
-- **Webhook/notification support.** Send alerts (Slack, Discord, email) when
+- **Batch export.** Export analysis results for multiple companies at once as
-  batch jobs complete or when a company's innovation score changes
+  a ZIP archive.
-  significantly.
+- **Rate limiting dashboard.** Surface rate limit status and usage statistics
-- **Multi-model support.** Let users choose between LLM providers per analysis
+  in the admin panel.
-  (e.g., GPT-4o, Gemini, Claude) and compare outputs.
+- **Async webhook delivery.** Move webhook delivery to a background task queue
-- **Patent trend charts.** Visualize patent filing frequency and technology
+  (e.g., Celery, arq) to avoid blocking the scheduler.
-  category distribution over time in the Analytics page.
+- **Multi-tenant support.** Scope analysis results and tracked companies per
-- **API pagination.** The `/analyze/batch` and `/jobs` endpoints could benefit
+  user or organization.
-  from cursor-based pagination for large result sets.
-- **OpenAPI client generation.** Auto-generate the TypeScript API client from
-  the FastAPI OpenAPI spec to keep frontend types in sync.
 
 ---
 

SPARC/analyzer.py

@@ -10,13 +10,13 @@ from concurrent.futures import ThreadPoolExecutor, as_completed
 from typing import Callable
 
 from SPARC import config
-
-logger = logging.getLogger(__name__)
 from SPARC.database import DatabaseClient
 from SPARC.llm import LLMAnalyzer
 from SPARC.serp_api import SERP
 from SPARC.types import BatchAnalysisResult, CompanyAnalysisResult, Patent, Patents
 
+logger = logging.getLogger(__name__)
+
 
 class CompanyAnalyzer:
     """Orchestrates end-to-end company performance analysis via patents."""

SPARC/api.py

@@ -3,9 +3,14 @@
 Provides REST API endpoints for analyzing company patent portfolios.
 """
 
+from __future__ import annotations
+
 from contextlib import asynccontextmanager
 from datetime import datetime
-from typing import Annotated, List
+from typing import TYPE_CHECKING, Annotated, List
+
+if TYPE_CHECKING:
+    from SPARC.database import DatabaseClient
 
 from fastapi import BackgroundTasks, Depends, FastAPI, HTTPException, Query, Request
 from fastapi.middleware.cors import CORSMiddleware
@@ -91,6 +96,24 @@ class JobStatus(BaseModel):
     error: str | None = None
 
 
+class AnalysisRecord(BaseModel):
+    """A single stored analysis result."""
+
+    id: int
+    company_name: str | None = None
+    analysis_type: str | None = None
+    model: str | None = None
+    response: str | None = None
+    timestamp: datetime | None = None
+
+
+class PaginatedAnalysisResponse(BaseModel):
+    """Paginated response for analysis result listings."""
+
+    items: list[AnalysisRecord]
+    next_cursor: str | None = None
+
+
 class PaginatedJobsResponse(BaseModel):
     """Paginated response for job listings."""
 
@@ -653,7 +676,6 @@ async def export_company_pdf(
         PDF file download
     """
     import io
-    import textwrap
 
     from reportlab.lib import colors
     from reportlab.lib.pagesizes import letter
@@ -868,6 +890,58 @@ async def analyze_single_patent(
         raise HTTPException(status_code=404, detail=str(e))
 
 
+@app.get(
+    "/analyze/batch",
+    response_model=PaginatedAnalysisResponse,
+    tags=["Analysis"],
+)
+async def list_analysis_results(
+    company_name: Annotated[
+        str | None,
+        Query(description="Filter results by company name"),
+    ] = None,
+    limit: Annotated[int, Query(ge=1, le=200)] = 50,
+    cursor: Annotated[
+        str | None,
+        Query(description="Opaque cursor from a previous response's next_cursor field"),
+    ] = None,
+    _: UserResponse = Depends(get_current_user),
+):
+    """List stored analysis results with cursor-based pagination.
+
+    Returns past analysis results ordered by timestamp descending. Use
+    ``limit`` to control page size (default 50, max 200). The response
+    includes a ``next_cursor`` field; pass it back as the ``cursor`` query
+    parameter to fetch the next page. When ``next_cursor`` is ``null``,
+    there are no more results.
+
+    Args:
+        company_name: Optional filter by company name
+        limit: Maximum number of results to return (default 50, max 200)
+        cursor: Opaque pagination cursor from a previous response
+
+    Returns:
+        Paginated list of analysis results
+    """
+    db = _get_job_db()
+    rows = db.list_analyses(company_name=company_name, limit=limit + 1, cursor=cursor)
+
+    has_next = len(rows) > limit
+    if has_next:
+        rows = rows[:limit]
+
+    items = [AnalysisRecord(**row) for row in rows]
+
+    next_cursor = None
+    if has_next and rows:
+        last = rows[-1]
+        ts = last["timestamp"]
+        ts_str = ts.isoformat() if hasattr(ts, "isoformat") else str(ts)
+        next_cursor = f"{ts_str}|{last['id']}"
+
+    return PaginatedAnalysisResponse(items=items, next_cursor=next_cursor)
+
+
 @app.post(
     "/analyze/batch",
     response_model=BatchAnalysisResponse,
@@ -1043,7 +1117,7 @@ async def list_jobs(
         str | None,
         Query(description="Filter by status: pending, running, completed, failed"),
     ] = None,
-    limit: Annotated[int, Query(ge=1, le=100)] = 10,
+    limit: Annotated[int, Query(ge=1, le=200)] = 50,
     cursor: Annotated[
         str | None,
         Query(description="Opaque cursor from a previous response's next_cursor field"),

SPARC/database.py

@@ -371,6 +371,48 @@ class DatabaseClient:
                 cursor.execute(query, params)
                 return [dict(row) for row in cursor.fetchall()]
 
+    def list_analyses(
+        self,
+        company_name: Optional[str] = None,
+        limit: int = 50,
+        cursor: Optional[str] = None,
+    ) -> List[Dict]:
+        """List analysis results with cursor-based pagination.
+
+        Args:
+            company_name: Optional filter by company name.
+            limit: Maximum number of records to return.
+            cursor: Opaque cursor (``timestamp|id``) from a previous response.
+
+        Returns:
+            List of analysis dicts ordered by timestamp descending.
+        """
+        conditions: list[str] = ["is_cached = FALSE"]
+        params: list = []
+
+        if company_name:
+            conditions.append("LOWER(company_name) = LOWER(%s)")
+            params.append(company_name)
+
+        if cursor:
+            try:
+                ts_str, cursor_id = cursor.rsplit("|", 1)
+                conditions.append("(timestamp, id) < (%s, %s)")
+                params.extend([ts_str, int(cursor_id)])
+            except (ValueError, TypeError):
+                pass  # Ignore malformed cursors; return from start
+
+        query = "SELECT id, company_name, analysis_type, model, response, timestamp FROM llm_messages"
+        if conditions:
+            query += " WHERE " + " AND ".join(conditions)
+        query += " ORDER BY timestamp DESC, id DESC LIMIT %s"
+        params.append(limit)
+
+        with self.get_conn() as conn:
+            with conn.cursor(cursor_factory=RealDictCursor) as cur:
+                cur.execute(query, params)
+                return [dict(row) for row in cur.fetchall()]
+
     def get_analytics(self, days: int = 30) -> Dict:
         """Get analytics on message usage.
 

SPARC/scheduler.py

@@ -2,14 +2,17 @@
 
 Uses APScheduler to periodically re-analyze tracked companies and
 detect significant changes in patent counts.
+
+The scheduler reuses the application-level pooled DatabaseClient
+(from ``SPARC.auth``) instead of creating its own connection, which
+avoids exhausting the database connection pool under load.
 """
 
 import logging
 import os
 
-from SPARC import config
 from SPARC.analyzer import CompanyAnalyzer
-from SPARC.database import DatabaseClient
+from SPARC.auth import get_db_client
 
 logger = logging.getLogger(__name__)
 
@@ -21,10 +24,13 @@ CHANGE_THRESHOLD_PERCENT = int(os.getenv("CHANGE_THRESHOLD_PERCENT", "20"))
 
 
 def run_scheduled_analysis() -> None:
-    """Re-analyze all tracked companies and check for significant changes."""
+    """Re-analyze all tracked companies and check for significant changes.
-    db = DatabaseClient(config.database_url)
+
-    db.connect()
+    Uses the shared pooled DatabaseClient from ``SPARC.auth.get_db_client()``
-    db.initialize_schema()
+    rather than creating a disposable connection, so the scheduler participates
+    in the same connection pool as the rest of the application.
+    """
+    db = get_db_client()
 
     tracked = db.list_tracked_companies()
     if not tracked:
@@ -74,7 +80,6 @@ def run_scheduled_analysis() -> None:
         except Exception as e:
             logger.error("Error analyzing tracked company %s: %s", name, e)
 
-    db.close()
     logger.info("Scheduled analysis complete")
 
 

docker-compose.yml

@@ -18,6 +18,7 @@ services:
     restart: unless-stopped
 
   init-db:
+    image: gitea.leeworks.dev/0xwheatyz/sparc:latest
     build: .
     container_name: sparc-init-db
     command: python scripts/init_database.py
@@ -29,6 +30,7 @@ services:
     restart: "no"
 
   api:
+    image: gitea.leeworks.dev/0xwheatyz/sparc:latest
     build: .
     container_name: sparc-api
     command: uvicorn SPARC.api:app --host 0.0.0.0 --port 8000
@@ -40,7 +42,7 @@ services:
       JWT_SECRET: ${JWT_SECRET:-sparc-secret-key-change-in-production}
       CORS_ORIGINS: ${CORS_ORIGINS:-}
       APP_ENV: ${APP_ENV:-development}
-      ROOT_PATH: /api
+      ROOT_PATH: ""
     ports:
       - "8000:8000"
     depends_on:
@@ -49,7 +51,7 @@ services:
       init-db:
         condition: service_completed_successfully
     volumes:
-      - ./patents:/app/patents
+      - patent_data:/app/patents
     restart: unless-stopped
 
   # Optional: MinIO for S3-compatible local object storage
@@ -76,6 +78,7 @@ services:
       - s3
 
   dashboard:
+    image: gitea.leeworks.dev/0xwheatyz/sparc:frontend-latest
     build: ./frontend
     container_name: sparc-dashboard
     ports:
@@ -86,4 +89,5 @@ services:
 
 volumes:
   postgres_data:
+  patent_data:
   minio_data:

docs/DEPLOYMENT.md

@@ -276,7 +276,7 @@ The `docker-compose.yml` includes all services needed for production:
 |---------|-----------|------|-------------|
 | `postgres` | sparc-postgres | 5432 | PostgreSQL database |
 | `init-db` | sparc-init-db | - | One-time database initialization (seeds admin user) |
-| `api` | sparc-api | 8000 | FastAPI REST API with JWT auth |
+| `api` | sparc-api | 8000 | FastAPI REST API with JWT auth (patent PDFs stored in `patent_data` volume) |
 | `dashboard` | sparc-dashboard | 8080 | React TypeScript web UI |
 
 ### Common Docker Compose Commands
@@ -307,6 +307,81 @@ docker-compose restart api
 
 ---
 
+## Patent PDF Storage
+
+The SPARC API downloads patent PDFs during analysis and stores them at `/app/patents` inside the container. These files are used for subsequent single-patent analysis requests and as a local cache to avoid re-downloading. If this directory is not persisted, all downloaded PDFs are lost when the container is recreated.
+
+### Docker Compose (default)
+
+The default `docker-compose.yml` declares a named volume called `patent_data` that is mounted at `/app/patents`:
+
+```yaml
+# In the api service:
+volumes:
+  - patent_data:/app/patents
+
+# At the top-level volumes section:
+volumes:
+  patent_data:
+```
+
+This means PDFs survive `docker compose down` and `docker compose up` cycles. To remove patent data intentionally, run:
+
+```bash
+docker compose down -v   # WARNING: also removes postgres_data
+# or selectively:
+docker volume rm sparc_patent_data
+```
+
+If you prefer a bind mount (e.g., for easy host-side access during development), replace the volume with:
+
+```yaml
+volumes:
+  - ./patents:/app/patents
+```
+
+### Kubernetes
+
+For Kubernetes deployments, create a PersistentVolumeClaim and mount it into the API pod:
+
+```yaml
+apiVersion: v1
+kind: PersistentVolumeClaim
+metadata:
+  name: sparc-patent-data
+spec:
+  accessModes:
+    - ReadWriteOnce
+  resources:
+    requests:
+      storage: 5Gi
+---
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: sparc-api
+spec:
+  template:
+    spec:
+      containers:
+        - name: api
+          volumeMounts:
+            - name: patent-data
+              mountPath: /app/patents
+      volumes:
+        - name: patent-data
+          persistentVolumeClaim:
+            claimName: sparc-patent-data
+```
+
+Adjust the storage size based on expected patent volume. Each patent PDF is typically 1-5 MB.
+
+### S3 Object Storage (alternative)
+
+For production deployments that need shared or highly durable storage, set `STORAGE_BACKEND=s3` in your `.env` file. This stores patent PDFs in an S3-compatible bucket (AWS S3 or MinIO) instead of the local filesystem, eliminating the need for a persistent volume. See the S3/MinIO section in `.env.example` for configuration details.
+
+---
+
 ## Troubleshooting
 
 ### Database Connection Issues

frontend/nginx.conf.template

@@ -15,7 +15,7 @@ server {
 
     # Proxy API requests to backend
     location /api/ {
-        proxy_pass ${API_URL}/;
+        proxy_pass ${API_URL};
         proxy_http_version 1.1;
         proxy_set_header Upgrade $http_upgrade;
         proxy_set_header Connection 'upgrade';

frontend/package-lock.json

@@ -26,6 +26,7 @@
         "eslint-plugin-react-hooks": "^5.1.0",
         "eslint-plugin-react-refresh": "^0.4.7",
         "globals": "^15.8.0",
+        "openapi-typescript": "^7.0.0",
         "postcss": "^8.4.39",
         "tailwindcss": "^3.4.4",
         "typescript": "~5.5.3",
@@ -1025,6 +1026,82 @@
         "node": ">= 8"
       }
     },
+    "node_modules/@redocly/ajv": {
+      "version": "8.11.2",
+      "resolved": "https://registry.npmjs.org/@redocly/ajv/-/ajv-8.11.2.tgz",
+      "integrity": "sha512-io1JpnwtIcvojV7QKDUSIuMN/ikdOUd1ReEnUnMKGfDVridQZ31J0MmIuqwuRjWDZfmvr+Q0MqCcfHM2gTivOg==",
+      "dev": true,
+      "license": "MIT",
+      "dependencies": {
+        "fast-deep-equal": "^3.1.1",
+        "json-schema-traverse": "^1.0.0",
+        "require-from-string": "^2.0.2",
+        "uri-js-replace": "^1.0.1"
+      },
+      "funding": {
+        "type": "github",
+        "url": "https://github.com/sponsors/epoberezkin"
+      }
+    },
+    "node_modules/@redocly/ajv/node_modules/json-schema-traverse": {
+      "version": "1.0.0",
+      "resolved": "https://registry.npmjs.org/json-schema-traverse/-/json-schema-traverse-1.0.0.tgz",
+      "integrity": "sha512-NM8/P9n3XjXhIZn1lLhkFaACTOURQXjWhV4BA/RnOv8xvgqtqpAX9IO4mRQxSx1Rlo4tqzeqb0sOlruaOy3dug==",
+      "dev": true,
+      "license": "MIT"
+    },
+    "node_modules/@redocly/config": {
+      "version": "0.22.0",
+      "resolved": "https://registry.npmjs.org/@redocly/config/-/config-0.22.0.tgz",
+      "integrity": "sha512-gAy93Ddo01Z3bHuVdPWfCwzgfaYgMdaZPcfL7JZ7hWJoK9V0lXDbigTWkhiPFAaLWzbOJ+kbUQG1+XwIm0KRGQ==",
+      "dev": true,
+      "license": "MIT"
+    },
+    "node_modules/@redocly/openapi-core": {
+      "version": "1.34.11",
+      "resolved": "https://registry.npmjs.org/@redocly/openapi-core/-/openapi-core-1.34.11.tgz",
+      "integrity": "sha512-V09ayfnb5GyysmvARbt+voFZAjGcf7hSYxOYxSkCc4fbH/DTfq5YWoec8cflvmHHqyIFbqvmGKmYFzqhr9zxDg==",
+      "dev": true,
+      "license": "MIT",
+      "dependencies": {
+        "@redocly/ajv": "8.11.2",
+        "@redocly/config": "0.22.0",
+        "colorette": "1.4.0",
+        "https-proxy-agent": "7.0.6",
+        "js-levenshtein": "1.1.6",
+        "js-yaml": "4.1.1",
+        "minimatch": "5.1.9",
+        "pluralize": "8.0.0",
+        "yaml-ast-parser": "0.0.43"
+      },
+      "engines": {
+        "node": ">=18.17.0",
+        "npm": ">=9.5.0"
+      }
+    },
+    "node_modules/@redocly/openapi-core/node_modules/brace-expansion": {
+      "version": "2.0.3",
+      "resolved": "https://registry.npmjs.org/brace-expansion/-/brace-expansion-2.0.3.tgz",
+      "integrity": "sha512-MCV/fYJEbqx68aE58kv2cA/kiky1G8vux3OR6/jbS+jIMe/6fJWa0DTzJU7dqijOWYwHi1t29FlfYI9uytqlpA==",
+      "dev": true,
+      "license": "MIT",
+      "dependencies": {
+        "balanced-match": "^1.0.0"
+      }
+    },
+    "node_modules/@redocly/openapi-core/node_modules/minimatch": {
+      "version": "5.1.9",
+      "resolved": "https://registry.npmjs.org/minimatch/-/minimatch-5.1.9.tgz",
+      "integrity": "sha512-7o1wEA2RyMP7Iu7GNba9vc0RWWGACJOCZBJX2GJWip0ikV+wcOsgVuY9uE8CPiyQhkGFSlhuSkZPavN7u1c2Fw==",
+      "dev": true,
+      "license": "ISC",
+      "dependencies": {
+        "brace-expansion": "^2.0.1"
+      },
+      "engines": {
+        "node": ">=10"
+      }
+    },
     "node_modules/@remix-run/router": {
       "version": "1.23.2",
       "resolved": "https://registry.npmjs.org/@remix-run/router/-/router-1.23.2.tgz",
@@ -1906,6 +1983,16 @@
         "acorn": "^6.0.0 || ^7.0.0 || ^8.0.0"
       }
     },
+    "node_modules/agent-base": {
+      "version": "7.1.4",
+      "resolved": "https://registry.npmjs.org/agent-base/-/agent-base-7.1.4.tgz",
+      "integrity": "sha512-MnA+YT8fwfJPgBx3m60MNqakm30XOkyIoH1y6huTQvC0PwZG7ki8NacLBcrPbNoo8vEZy7Jpuk7+jMO+CUovTQ==",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": ">= 14"
+      }
+    },
     "node_modules/ajv": {
       "version": "6.14.0",
       "resolved": "https://registry.npmjs.org/ajv/-/ajv-6.14.0.tgz",
@@ -1923,6 +2010,16 @@
         "url": "https://github.com/sponsors/epoberezkin"
       }
     },
+    "node_modules/ansi-colors": {
+      "version": "4.1.3",
+      "resolved": "https://registry.npmjs.org/ansi-colors/-/ansi-colors-4.1.3.tgz",
+      "integrity": "sha512-/6w/C21Pm1A7aZitlI5Ni/2J6FFQN8i1Cvz3kHABAAbw93v/NlvKdVOqz7CCWz/3iv/JplRSEEZ83XION15ovw==",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": ">=6"
+      }
+    },
     "node_modules/ansi-styles": {
       "version": "4.3.0",
       "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-4.3.0.tgz",
@@ -2190,6 +2287,13 @@
         "url": "https://github.com/chalk/chalk?sponsor=1"
       }
     },
+    "node_modules/change-case": {
+      "version": "5.4.4",
+      "resolved": "https://registry.npmjs.org/change-case/-/change-case-5.4.4.tgz",
+      "integrity": "sha512-HRQyTk2/YPEkt9TnUPbOpr64Uw3KOicFWPVBb+xiHvd6eBx/qPr9xqfBFDT8P2vWsvvz4jbEkfDe71W3VyNu2w==",
+      "dev": true,
+      "license": "MIT"
+    },
     "node_modules/chokidar": {
       "version": "3.6.0",
       "resolved": "https://registry.npmjs.org/chokidar/-/chokidar-3.6.0.tgz",
@@ -2257,6 +2361,13 @@
       "dev": true,
       "license": "MIT"
     },
+    "node_modules/colorette": {
+      "version": "1.4.0",
+      "resolved": "https://registry.npmjs.org/colorette/-/colorette-1.4.0.tgz",
+      "integrity": "sha512-Y2oEozpomLn7Q3HFP7dpww7AtMJplbM9lGZP6RDfHqmbeRjiwRg4n6VM6j4KLmRke85uWEI7JqF17f3pqdRA0g==",
+      "dev": true,
+      "license": "MIT"
+    },
     "node_modules/combined-stream": {
       "version": "1.0.8",
       "resolved": "https://registry.npmjs.org/combined-stream/-/combined-stream-1.0.8.tgz",
@@ -3165,6 +3276,20 @@
         "node": ">= 0.4"
       }
     },
+    "node_modules/https-proxy-agent": {
+      "version": "7.0.6",
+      "resolved": "https://registry.npmjs.org/https-proxy-agent/-/https-proxy-agent-7.0.6.tgz",
+      "integrity": "sha512-vK9P5/iUfdl95AI+JVyUuIcVtd4ofvtrOr3HNtM2yxC9bnMbEdp3x01OhQNnjb8IJYi38VlTE3mBXwcfvywuSw==",
+      "dev": true,
+      "license": "MIT",
+      "dependencies": {
+        "agent-base": "^7.1.2",
+        "debug": "4"
+      },
+      "engines": {
+        "node": ">= 14"
+      }
+    },
     "node_modules/ignore": {
       "version": "5.3.2",
       "resolved": "https://registry.npmjs.org/ignore/-/ignore-5.3.2.tgz",
@@ -3202,6 +3327,19 @@
         "node": ">=0.8.19"
       }
     },
+    "node_modules/index-to-position": {
+      "version": "1.2.0",
+      "resolved": "https://registry.npmjs.org/index-to-position/-/index-to-position-1.2.0.tgz",
+      "integrity": "sha512-Yg7+ztRkqslMAS2iFaU+Oa4KTSidr63OsFGlOrJoW981kIYO3CGCS3wA95P1mUi/IVSJkn0D479KTJpVpvFNuw==",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": ">=18"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/sindresorhus"
+      }
+    },
     "node_modules/internmap": {
       "version": "2.0.3",
       "resolved": "https://registry.npmjs.org/internmap/-/internmap-2.0.3.tgz",
@@ -3290,6 +3428,16 @@
         "jiti": "bin/jiti.js"
       }
     },
+    "node_modules/js-levenshtein": {
+      "version": "1.1.6",
+      "resolved": "https://registry.npmjs.org/js-levenshtein/-/js-levenshtein-1.1.6.tgz",
+      "integrity": "sha512-X2BB11YZtrRqY4EnQcLX5Rh373zbK4alC1FW7D7MBhL2gtcC17cTnr6DmfHZeS0s2rTHjUTMMHfG7gO8SSdw+g==",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": ">=0.10.0"
+      }
+    },
     "node_modules/js-tokens": {
       "version": "4.0.0",
       "resolved": "https://registry.npmjs.org/js-tokens/-/js-tokens-4.0.0.tgz",
@@ -3608,6 +3756,40 @@
         "node": ">= 6"
       }
     },
+    "node_modules/openapi-typescript": {
+      "version": "7.13.0",
+      "resolved": "https://registry.npmjs.org/openapi-typescript/-/openapi-typescript-7.13.0.tgz",
+      "integrity": "sha512-EFP392gcqXS7ntPvbhBzbF8TyBA+baIYEm791Hy5YkjDYKTnk/Tn5OQeKm5BIZvJihpp8Zzr4hzx0Irde1LNGQ==",
+      "dev": true,
+      "license": "MIT",
+      "dependencies": {
+        "@redocly/openapi-core": "^1.34.6",
+        "ansi-colors": "^4.1.3",
+        "change-case": "^5.4.4",
+        "parse-json": "^8.3.0",
+        "supports-color": "^10.2.2",
+        "yargs-parser": "^21.1.1"
+      },
+      "bin": {
+        "openapi-typescript": "bin/cli.js"
+      },
+      "peerDependencies": {
+        "typescript": "^5.x"
+      }
+    },
+    "node_modules/openapi-typescript/node_modules/supports-color": {
+      "version": "10.2.2",
+      "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-10.2.2.tgz",
+      "integrity": "sha512-SS+jx45GF1QjgEXQx4NJZV9ImqmO2NPz5FNsIHrsDjh2YsHnawpan7SNQ1o8NuhrbHZy9AZhIoCUiCeaW/C80g==",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": ">=18"
+      },
+      "funding": {
+        "url": "https://github.com/chalk/supports-color?sponsor=1"
+      }
+    },
     "node_modules/optionator": {
       "version": "0.9.4",
       "resolved": "https://registry.npmjs.org/optionator/-/optionator-0.9.4.tgz",
@@ -3671,6 +3853,24 @@
         "node": ">=6"
       }
     },
+    "node_modules/parse-json": {
+      "version": "8.3.0",
+      "resolved": "https://registry.npmjs.org/parse-json/-/parse-json-8.3.0.tgz",
+      "integrity": "sha512-ybiGyvspI+fAoRQbIPRddCcSTV9/LsJbf0e/S85VLowVGzRmokfneg2kwVW/KU5rOXrPSbF1qAKPMgNTqqROQQ==",
+      "dev": true,
+      "license": "MIT",
+      "dependencies": {
+        "@babel/code-frame": "^7.26.2",
+        "index-to-position": "^1.1.0",
+        "type-fest": "^4.39.1"
+      },
+      "engines": {
+        "node": ">=18"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/sindresorhus"
+      }
+    },
     "node_modules/path-exists": {
       "version": "4.0.0",
       "resolved": "https://registry.npmjs.org/path-exists/-/path-exists-4.0.0.tgz",
@@ -3738,6 +3938,16 @@
         "node": ">= 6"
       }
     },
+    "node_modules/pluralize": {
+      "version": "8.0.0",
+      "resolved": "https://registry.npmjs.org/pluralize/-/pluralize-8.0.0.tgz",
+      "integrity": "sha512-Nc3IT5yHzflTfbjgqWcCPpo7DaKy4FnpB0l/zCAW0Tc7jxAiuqSxHasntB3D7887LSrA93kDJ9IXovxJYxyLCA==",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": ">=4"
+      }
+    },
     "node_modules/postcss": {
       "version": "8.5.8",
       "resolved": "https://registry.npmjs.org/postcss/-/postcss-8.5.8.tgz",
@@ -4124,6 +4334,16 @@
         "decimal.js-light": "^2.4.1"
       }
     },
+    "node_modules/require-from-string": {
+      "version": "2.0.2",
+      "resolved": "https://registry.npmjs.org/require-from-string/-/require-from-string-2.0.2.tgz",
+      "integrity": "sha512-Xf0nWe6RseziFMu+Ap9biiUbmplq6S9/p+7w7YXP/JBHhrUDDUhwa+vANyubuqfZWTveU//DYVGsDG7RKL/vEw==",
+      "dev": true,
+      "license": "MIT",
+      "engines": {
+        "node": ">=0.10.0"
+      }
+    },
     "node_modules/resolve": {
       "version": "1.22.11",
       "resolved": "https://registry.npmjs.org/resolve/-/resolve-1.22.11.tgz",
@@ -4510,6 +4730,19 @@
         "node": ">= 0.8.0"
       }
     },
+    "node_modules/type-fest": {
+      "version": "4.41.0",
+      "resolved": "https://registry.npmjs.org/type-fest/-/type-fest-4.41.0.tgz",
+      "integrity": "sha512-TeTSQ6H5YHvpqVwBRcnLDCBnDOHWYu7IvGbHT6N8AOymcr9PJGjc1GTtiWZTYg0NCgYwvnYWEkVChQAr9bjfwA==",
+      "dev": true,
+      "license": "(MIT OR CC0-1.0)",
+      "engines": {
+        "node": ">=16"
+      },
+      "funding": {
+        "url": "https://github.com/sponsors/sindresorhus"
+      }
+    },
     "node_modules/typescript": {
       "version": "5.5.4",
       "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.5.4.tgz",
@@ -4589,6 +4822,13 @@
         "punycode": "^2.1.0"
       }
     },
+    "node_modules/uri-js-replace": {
+      "version": "1.0.1",
+      "resolved": "https://registry.npmjs.org/uri-js-replace/-/uri-js-replace-1.0.1.tgz",
+      "integrity": "sha512-W+C9NWNLFOoBI2QWDp4UT9pv65r2w5Cx+3sTYFvtMdDBxkKt1syCqsUdSFAChbEe1uK5TfS04wt/nGwmaeIQ0g==",
+      "dev": true,
+      "license": "MIT"
+    },
     "node_modules/util-deprecate": {
       "version": "1.0.2",
       "resolved": "https://registry.npmjs.org/util-deprecate/-/util-deprecate-1.0.2.tgz",
@@ -4711,6 +4951,23 @@
       "dev": true,
       "license": "ISC"
     },
+    "node_modules/yaml-ast-parser": {
+      "version": "0.0.43",
+      "resolved": "https://registry.npmjs.org/yaml-ast-parser/-/yaml-ast-parser-0.0.43.tgz",
+      "integrity": "sha512-2PTINUwsRqSd+s8XxKaJWQlUuEMHJQyEuh2edBbW8KNJz0SJPwUSD2zRWqezFEdN7IzAgeuYHFUCF7o8zRdZ0A==",
+      "dev": true,
+      "license": "Apache-2.0"
+    },
+    "node_modules/yargs-parser": {
+      "version": "21.1.1",
+      "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-21.1.1.tgz",
+      "integrity": "sha512-tVpsJW7DdjecAiFpbIB1e3qxIQsE6NoPc5/eTdrbbIC4h0LVsWhnoa3g+m2HclBIujHzsxZ4VJVA+GUuc2/LBw==",
+      "dev": true,
+      "license": "ISC",
+      "engines": {
+        "node": ">=12"
+      }
+    },
     "node_modules/yocto-queue": {
       "version": "0.1.0",
       "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz",

frontend/src/pages/Analysis.tsx

@@ -159,7 +159,7 @@ export function Analysis() {
                   </button>
                 </div>
               </div>
-              <div className="prose prose-invert max-w-none">
+              <div className="prose dark:prose-invert max-w-none">
                 <div className="text-text-primary whitespace-pre-wrap leading-relaxed">
                   {result.analysis}
                 </div>

tests/test_analyze_single_patent.py

@@ -0,0 +1,211 @@
+"""Tests for analyze_single_patent auto-download path.
+
+Covers issue #1661:
+- PDF exists on disk: direct analysis (happy path)
+- PDF not on disk, cached link exists: auto-download and analyze
+- PDF not on disk, no cached link: FileNotFoundError
+- Analysis failure after PDF found: graceful error message
+- Model override parameter passthrough
+"""
+
+import os
+from unittest.mock import MagicMock, patch
+
+import pytest
+
+from SPARC.analyzer import CompanyAnalyzer
+from SPARC.types import Patent
+
+
+@pytest.fixture(autouse=True)
+def mock_db(mocker):
+    """Mock DatabaseClient so no real DB is needed."""
+    mock_db_cls = mocker.patch("SPARC.analyzer.DatabaseClient")
+    mock_db_instance = MagicMock()
+    mock_db_instance.get_cached_patent.return_value = None
+    mock_db_instance.get_cached_serp_query.return_value = None
+    mock_db_cls.return_value = mock_db_instance
+    return mock_db_instance
+
+
+@pytest.fixture
+def analyzer(mocker, mock_db):
+    """Create a CompanyAnalyzer with mocked LLM and DB."""
+    mocker.patch("SPARC.analyzer.LLMAnalyzer")
+    return CompanyAnalyzer(openrouter_api_key="test-key")
+
+
+class TestAnalyzeSinglePatentAutoDownload:
+    """Test the auto-download logic in analyze_single_patent."""
+
+    def test_pdf_on_disk_analyzed_directly(self, analyzer, mocker, tmp_path):
+        """When PDF exists on disk, it is analyzed directly without download."""
+        patent_id = "US-11234567-B2"
+
+        # Create the patents dir and PDF file
+        patents_dir = tmp_path / "patents"
+        patents_dir.mkdir()
+        pdf_path = patents_dir / f"{patent_id}.pdf"
+        pdf_path.write_bytes(b"fake PDF content")
+
+        mock_parse = mocker.patch("SPARC.analyzer.SERP.parse_patent_pdf")
+        mock_minimize = mocker.patch("SPARC.analyzer.SERP.minimize_patent_for_llm")
+        mock_parse.return_value = {"abstract": "test", "claims": "test claims"}
+        mock_minimize.return_value = "minimized content"
+        analyzer.llm_analyzer.analyze_patent_content.return_value = "Good patent."
+
+        # Change cwd so patents/{patent_id}.pdf resolves to our tmp_path
+        original_cwd = os.getcwd()
+        os.chdir(tmp_path)
+        try:
+            result = analyzer.analyze_single_patent(patent_id, "TestCo")
+        finally:
+            os.chdir(original_cwd)
+
+        assert result == "Good patent."
+        # DB cache should not have been queried since file existed
+        analyzer.db.get_cached_patent.assert_not_called()
+
+    def test_auto_download_from_cached_link(self, analyzer, mocker, tmp_path):
+        """When PDF is not on disk but link is cached, auto-download occurs."""
+        patent_id = "US-99887766-A1"
+
+        # No patents dir exists (PDF not on disk)
+        mock_save = mocker.patch("SPARC.analyzer.SERP.save_patents")
+        downloaded_patent = Patent(patent_id=patent_id, pdf_link="https://example.com/patent.pdf")
+        downloaded_patent.pdf_path = f"patents/{patent_id}.pdf"
+        mock_save.return_value = downloaded_patent
+
+        # Cached patent has a PDF link
+        analyzer.db.get_cached_patent.return_value = {
+            "patent_id": patent_id,
+            "pdf_link": "https://example.com/patent.pdf",
+        }
+
+        # Mock the rest of the analysis pipeline
+        mock_parse = mocker.patch("SPARC.analyzer.SERP.parse_patent_pdf")
+        mock_minimize = mocker.patch("SPARC.analyzer.SERP.minimize_patent_for_llm")
+        mock_parse.return_value = {"abstract": "test abstract"}
+        mock_minimize.return_value = "minimized content"
+        analyzer.llm_analyzer.analyze_patent_content.return_value = "Strong innovation."
+
+        # Change cwd so patents/{patent_id}.pdf does NOT exist
+        original_cwd = os.getcwd()
+        os.chdir(tmp_path)
+        try:
+            result = analyzer.analyze_single_patent(patent_id, "DownloadCo")
+        finally:
+            os.chdir(original_cwd)
+
+        assert result == "Strong innovation."
+        analyzer.db.get_cached_patent.assert_called_once_with(patent_id)
+        mock_save.assert_called_once()
+        # Verify the Patent passed to save_patents has the correct ID and link
+        saved_patent = mock_save.call_args[0][0]
+        assert saved_patent.patent_id == patent_id
+        assert saved_patent.pdf_link == "https://example.com/patent.pdf"
+
+    def test_no_cached_link_raises_file_not_found(self, analyzer, mocker, tmp_path):
+        """When PDF is not on disk and no cached link, FileNotFoundError raised."""
+        patent_id = "US-00000000-X1"
+
+        analyzer.db.get_cached_patent.return_value = None
+
+        original_cwd = os.getcwd()
+        os.chdir(tmp_path)
+        try:
+            with pytest.raises(FileNotFoundError, match="no download link is cached"):
+                analyzer.analyze_single_patent(patent_id, "MissingCo")
+        finally:
+            os.chdir(original_cwd)
+
+    def test_cached_patent_without_pdf_link_raises(self, analyzer, mocker, tmp_path):
+        """When cached patent exists but has no pdf_link, FileNotFoundError raised."""
+        patent_id = "US-11111111-B1"
+
+        analyzer.db.get_cached_patent.return_value = {
+            "patent_id": patent_id,
+            "pdf_link": None,
+        }
+
+        original_cwd = os.getcwd()
+        os.chdir(tmp_path)
+        try:
+            with pytest.raises(FileNotFoundError, match="no download link is cached"):
+                analyzer.analyze_single_patent(patent_id, "NoPDFCo")
+        finally:
+            os.chdir(original_cwd)
+
+    def test_analysis_exception_returns_error_message(self, analyzer, mocker, tmp_path):
+        """When analysis pipeline fails, returns error string instead of raising."""
+        patent_id = "US-22222222-A2"
+
+        # Create the PDF on disk so it skips download
+        patents_dir = tmp_path / "patents"
+        patents_dir.mkdir()
+        (patents_dir / f"{patent_id}.pdf").write_bytes(b"fake PDF")
+
+        # Parse fails
+        mocker.patch(
+            "SPARC.analyzer.SERP.parse_patent_pdf",
+            side_effect=ValueError("Corrupt PDF"),
+        )
+
+        original_cwd = os.getcwd()
+        os.chdir(tmp_path)
+        try:
+            result = analyzer.analyze_single_patent(patent_id, "ErrorCo")
+        finally:
+            os.chdir(original_cwd)
+
+        assert "Failed to analyze patent" in result
+        assert "Corrupt PDF" in result
+
+    def test_model_override_passed_to_llm(self, analyzer, mocker, tmp_path):
+        """The model parameter is forwarded to the LLM analyzer."""
+        patent_id = "US-33333333-B2"
+
+        patents_dir = tmp_path / "patents"
+        patents_dir.mkdir()
+        (patents_dir / f"{patent_id}.pdf").write_bytes(b"fake PDF")
+
+        mocker.patch("SPARC.analyzer.SERP.parse_patent_pdf", return_value={"abstract": "test"})
+        mocker.patch("SPARC.analyzer.SERP.minimize_patent_for_llm", return_value="content")
+        analyzer.llm_analyzer.analyze_patent_content.return_value = "Analysis result."
+
+        original_cwd = os.getcwd()
+        os.chdir(tmp_path)
+        try:
+            result = analyzer.analyze_single_patent(
+                patent_id, "ModelCo", model="openai/gpt-4o"
+            )
+        finally:
+            os.chdir(original_cwd)
+
+        assert result == "Analysis result."
+        analyzer.llm_analyzer.analyze_patent_content.assert_called_once_with(
+            patent_content="content",
+            company_name="ModelCo",
+            model="openai/gpt-4o",
+        )
+
+    def test_file_not_found_during_parse_re_raised(self, analyzer, mocker, tmp_path):
+        """FileNotFoundError during parsing is re-raised, not caught."""
+        patent_id = "US-44444444-C1"
+
+        patents_dir = tmp_path / "patents"
+        patents_dir.mkdir()
+        (patents_dir / f"{patent_id}.pdf").write_bytes(b"fake PDF")
+
+        mocker.patch(
+            "SPARC.analyzer.SERP.parse_patent_pdf",
+            side_effect=FileNotFoundError("PDF file vanished"),
+        )
+
+        original_cwd = os.getcwd()
+        os.chdir(tmp_path)
+        try:
+            with pytest.raises(FileNotFoundError, match="PDF file vanished"):
+                analyzer.analyze_single_patent(patent_id, "VanishCo")
+        finally:
+            os.chdir(original_cwd)

tests/test_auth.py

@@ -1,13 +1,29 @@
-"""Tests for JWT authentication flow: register, login, protected routes, refresh, admin access."""
+"""Tests for JWT authentication flow: register, login, protected routes, refresh, admin access.
 
-from datetime import datetime, timezone
+Covers all five scenarios required by issue #1624:
+1. Registration (POST /auth/register)
+2. Login (POST /auth/login)
+3. Protected route access (GET /auth/me) -- valid, missing, expired, wrong-type tokens
+4. Token refresh (POST /auth/refresh)
+5. Admin-only endpoints (GET /admin/users, PATCH role, DELETE user)
+
+All tests use mocked DB fixtures and require no live database.
+"""
+
+from datetime import datetime, timedelta, timezone
 from unittest.mock import MagicMock, patch
 
+import jwt as pyjwt
 import pytest
 from fastapi.testclient import TestClient
 
 from SPARC.api import app
-from SPARC.auth import create_access_token, create_refresh_token
+from SPARC.auth import (
+    JWT_ALGORITHM,
+    JWT_SECRET,
+    create_access_token,
+    create_refresh_token,
+)
 
 
 @pytest.fixture
@@ -171,12 +187,6 @@ class TestGetMe:
 
     def test_expired_token_returns_401(self, client, mock_db):
         """An expired token should return 401."""
-        # Create a token that has already expired
-        from datetime import timedelta
-
-        import jwt as pyjwt
-        from SPARC.auth import JWT_ALGORITHM, JWT_SECRET
-
         payload = {
             "sub": "1",
             "email": "user@test.com",
@@ -300,3 +310,193 @@ class TestAdminUsers:
 
         assert response.status_code == 400
         assert "own role" in response.json()["detail"].lower()
+
+    def test_role_change_nonexistent_user_returns_404(self, client, mock_db):
+        """Changing role for a user that does not exist should return 404."""
+        admin = _make_admin_user()
+        mock_db.get_user_by_id.return_value = admin
+        mock_db.update_user_role.return_value = None
+
+        response = client.patch(
+            "/admin/users/999/role",
+            json={"role": "admin"},
+            headers=_auth_header(admin),
+        )
+
+        assert response.status_code == 404
+        assert "not found" in response.json()["detail"].lower()
+
+    def test_regular_user_cannot_change_role(self, client, mock_db):
+        """Non-admin user should receive 403 when trying to change roles."""
+        user = _make_regular_user()
+        mock_db.get_user_by_id.return_value = user
+
+        response = client.patch(
+            "/admin/users/1/role",
+            json={"role": "admin"},
+            headers=_auth_header(user),
+        )
+
+        assert response.status_code == 403
+
+
+class TestAdminDeleteUser:
+    """DELETE /admin/users/{user_id}"""
+
+    def test_admin_can_delete_user(self, client, mock_db):
+        """Admin should be able to delete another user."""
+        admin = _make_admin_user()
+        mock_db.get_user_by_id.return_value = admin
+        mock_db.delete_user.return_value = True
+
+        response = client.delete(
+            "/admin/users/2",
+            headers=_auth_header(admin),
+        )
+
+        assert response.status_code == 200
+        assert "deleted" in response.json()["message"].lower()
+        mock_db.delete_user.assert_called_once_with(2)
+
+    def test_admin_cannot_delete_self(self, client, mock_db):
+        """Admin should not be able to delete themselves."""
+        admin = _make_admin_user()
+        mock_db.get_user_by_id.return_value = admin
+
+        response = client.delete(
+            "/admin/users/1",
+            headers=_auth_header(admin),
+        )
+
+        assert response.status_code == 400
+        assert "yourself" in response.json()["detail"].lower()
+
+    def test_delete_nonexistent_user_returns_404(self, client, mock_db):
+        """Deleting a user that does not exist should return 404."""
+        admin = _make_admin_user()
+        mock_db.get_user_by_id.return_value = admin
+        mock_db.delete_user.return_value = False
+
+        response = client.delete(
+            "/admin/users/999",
+            headers=_auth_header(admin),
+        )
+
+        assert response.status_code == 404
+        assert "not found" in response.json()["detail"].lower()
+
+    def test_regular_user_cannot_delete_user(self, client, mock_db):
+        """Non-admin user should receive 403 when trying to delete users."""
+        user = _make_regular_user()
+        mock_db.get_user_by_id.return_value = user
+
+        response = client.delete(
+            "/admin/users/1",
+            headers=_auth_header(user),
+        )
+
+        assert response.status_code == 403
+
+    def test_no_token_cannot_delete_user(self, client):
+        """Missing token should be rejected for delete endpoint."""
+        response = client.delete("/admin/users/1")
+        assert response.status_code in (401, 403)
+
+
+class TestEdgeCases:
+    """Additional edge-case tests for auth robustness."""
+
+    def test_register_invalid_email_returns_422(self, client, mock_db):
+        """Registration with an invalid email format should return 422."""
+        response = client.post(
+            "/auth/register",
+            json={"email": "not-an-email", "password": "securepass123"},
+        )
+
+        assert response.status_code == 422
+
+    def test_register_short_password_returns_422(self, client, mock_db):
+        """Registration with a password shorter than 8 chars should return 422."""
+        response = client.post(
+            "/auth/register",
+            json={"email": "user@test.com", "password": "short"},
+        )
+
+        assert response.status_code == 422
+
+    def test_register_missing_fields_returns_422(self, client, mock_db):
+        """Registration with missing fields should return 422."""
+        response = client.post("/auth/register", json={})
+        assert response.status_code == 422
+
+    def test_login_missing_fields_returns_422(self, client, mock_db):
+        """Login with missing fields should return 422."""
+        response = client.post("/auth/login", json={"email": "user@test.com"})
+        assert response.status_code == 422
+
+    def test_malformed_token_returns_401(self, client, mock_db):
+        """A completely malformed token string should return 401."""
+        response = client.get(
+            "/auth/me",
+            headers={"Authorization": "Bearer not.a.valid.jwt.token"},
+        )
+        assert response.status_code == 401
+
+    def test_token_with_wrong_secret_returns_401(self, client, mock_db):
+        """A token signed with a different secret should return 401."""
+        payload = {
+            "sub": "1",
+            "email": "user@test.com",
+            "role": "user",
+            "exp": datetime.now(timezone.utc) + timedelta(hours=1),
+            "type": "access",
+        }
+        wrong_secret_token = pyjwt.encode(payload, "wrong-secret", algorithm=JWT_ALGORITHM)
+
+        response = client.get(
+            "/auth/me",
+            headers={"Authorization": f"Bearer {wrong_secret_token}"},
+        )
+        assert response.status_code == 401
+
+    def test_token_for_deleted_user_returns_401(self, client, mock_db):
+        """A valid token for a user no longer in the DB should return 401."""
+        user = _make_regular_user()
+        mock_db.get_user_by_id.return_value = None  # user was deleted
+
+        response = client.get("/auth/me", headers=_auth_header(user))
+        assert response.status_code == 401
+
+    def test_refresh_for_deleted_user_returns_401(self, client, mock_db):
+        """Refreshing a token for a deleted user should return 401."""
+        user = _make_regular_user()
+        mock_db.get_user_by_id.return_value = None
+        refresh = create_refresh_token(user["id"], user["email"], user["role"])
+
+        response = client.post(
+            "/auth/refresh", json={"refresh_token": refresh}
+        )
+        assert response.status_code == 401
+
+    def test_login_returns_decodable_tokens(self, client, mock_db):
+        """Tokens returned by login should be decodable and contain expected claims."""
+        user = _make_regular_user()
+        mock_db.authenticate_user.return_value = user
+
+        response = client.post(
+            "/auth/login",
+            json={"email": "user@test.com", "password": "correctpassword"},
+        )
+
+        data = response.json()
+        access_payload = pyjwt.decode(
+            data["access_token"], JWT_SECRET, algorithms=[JWT_ALGORITHM]
+        )
+        assert access_payload["sub"] == str(user["id"])
+        assert access_payload["email"] == user["email"]
+        assert access_payload["type"] == "access"
+
+        refresh_payload = pyjwt.decode(
+            data["refresh_token"], JWT_SECRET, algorithms=[JWT_ALGORITHM]
+        )
+        assert refresh_payload["type"] == "refresh"

tests/test_export.py

@@ -0,0 +1,224 @@
+"""Tests for export endpoints: CSV and PDF export of analysis results.
+
+Covers issue #1655:
+- GET /export/{company_name} (CSV export)
+- GET /export/{company_name}/pdf (PDF export)
+
+All tests mock the database layer and use JWT auth fixtures from test_auth patterns.
+"""
+
+from datetime import datetime, timezone
+from unittest.mock import MagicMock, patch
+
+import pytest
+from fastapi.testclient import TestClient
+
+from SPARC.api import app
+from SPARC.auth import create_access_token
+
+
+@pytest.fixture
+def client():
+    """Create test client."""
+    return TestClient(app)
+
+
+@pytest.fixture(autouse=True)
+def mock_db():
+    """Mock the database client used by export and auth endpoints."""
+    db = MagicMock()
+
+    # Default: user exists for auth
+    db.get_user_by_id.return_value = {
+        "id": 1,
+        "email": "user@test.com",
+        "role": "user",
+        "created_at": datetime(2025, 1, 1, tzinfo=timezone.utc),
+    }
+
+    # Mock get_conn for export queries
+    mock_cursor = MagicMock()
+    mock_conn = MagicMock()
+    mock_conn.cursor.return_value.__enter__ = MagicMock(return_value=mock_cursor)
+    mock_conn.cursor.return_value.__exit__ = MagicMock(return_value=False)
+    db.get_conn.return_value.__enter__ = MagicMock(return_value=mock_conn)
+    db.get_conn.return_value.__exit__ = MagicMock(return_value=False)
+    db._mock_cursor = mock_cursor
+
+    with patch("SPARC.api.get_db_client", return_value=db), \
+         patch("SPARC.auth.get_db_client", return_value=db):
+        yield db
+
+
+def _auth_header():
+    """Create an Authorization header with a valid access token."""
+    token = create_access_token(1, "user@test.com", "user")
+    return {"Authorization": f"Bearer {token}"}
+
+
+def _sample_rows():
+    """Return sample llm_messages rows as tuples (matching cursor.fetchall format)."""
+    return [
+        (
+            "NVIDIA",
+            "company_analysis",
+            "anthropic/claude-3.5-sonnet",
+            "Strong AI patent portfolio with focus on GPU architectures.",
+            datetime(2025, 6, 15, 10, 30, 0),
+        ),
+        (
+            "NVIDIA",
+            "patent_analysis",
+            "openai/gpt-4o",
+            "Patent US-12345678-B2 covers novel tensor core design.",
+            datetime(2025, 6, 14, 9, 0, 0),
+        ),
+    ]
+
+
+class TestCSVExport:
+    """GET /export/{company_name} -- CSV export."""
+
+    def test_csv_export_success(self, client, mock_db):
+        """Valid company with results returns a CSV file."""
+        mock_db._mock_cursor.fetchall.return_value = _sample_rows()
+
+        response = client.get("/export/NVIDIA", headers=_auth_header())
+
+        assert response.status_code == 200
+        assert response.headers["content-type"].startswith("text/csv")
+        assert "attachment" in response.headers.get("content-disposition", "")
+        assert "sparc_nvidia_export.csv" in response.headers["content-disposition"]
+
+        # Verify CSV content (CSV uses \r\n line endings)
+        lines = response.text.strip().split("\n")
+        assert len(lines) == 3  # header + 2 data rows
+        assert lines[0].strip() == "company_name,analysis_type,model,analysis,timestamp"
+        assert "NVIDIA" in lines[1]
+        assert "company_analysis" in lines[1]
+
+    def test_csv_export_no_results_returns_404(self, client, mock_db):
+        """Unknown company returns 404."""
+        mock_db._mock_cursor.fetchall.return_value = []
+
+        response = client.get("/export/nonexistent", headers=_auth_header())
+
+        assert response.status_code == 404
+        assert "No analysis results found" in response.json()["detail"]
+
+    def test_csv_export_unauthenticated_returns_401(self, client):
+        """Request without token returns 401."""
+        response = client.get("/export/NVIDIA")
+        assert response.status_code == 401
+
+    def test_csv_export_invalid_token_returns_401(self, client):
+        """Request with invalid token returns 401."""
+        response = client.get(
+            "/export/NVIDIA",
+            headers={"Authorization": "Bearer invalid.token.here"},
+        )
+        assert response.status_code == 401
+
+    def test_csv_export_filename_sanitization(self, client, mock_db):
+        """Company names with spaces get sanitized in the filename."""
+        mock_db._mock_cursor.fetchall.return_value = [
+            (
+                "Tesla Motors",
+                "company_analysis",
+                "anthropic/claude-3.5-sonnet",
+                "EV patent portfolio analysis.",
+                datetime(2025, 6, 15, 10, 0, 0),
+            ),
+        ]
+
+        response = client.get("/export/Tesla Motors", headers=_auth_header())
+
+        assert response.status_code == 200
+        assert "tesla_motors" in response.headers["content-disposition"]
+
+    def test_csv_export_single_row(self, client, mock_db):
+        """Single analysis result produces valid CSV with one data row."""
+        mock_db._mock_cursor.fetchall.return_value = [_sample_rows()[0]]
+
+        response = client.get("/export/NVIDIA", headers=_auth_header())
+
+        assert response.status_code == 200
+        lines = response.text.strip().split("\n")
+        assert len(lines) == 2  # header + 1 data row
+
+
+class TestPDFExport:
+    """GET /export/{company_name}/pdf -- PDF report export."""
+
+    def test_pdf_export_success(self, client, mock_db):
+        """Valid company with results returns a PDF file."""
+        mock_db._mock_cursor.fetchall.return_value = _sample_rows()
+
+        response = client.get("/export/NVIDIA/pdf", headers=_auth_header())
+
+        assert response.status_code == 200
+        assert response.headers["content-type"] == "application/pdf"
+        assert "attachment" in response.headers.get("content-disposition", "")
+        # PDF files start with %PDF
+        assert response.content[:4] == b"%PDF"
+
+    def test_pdf_export_no_results_returns_404(self, client, mock_db):
+        """Unknown company returns 404."""
+        mock_db._mock_cursor.fetchall.return_value = []
+
+        response = client.get("/export/nonexistent/pdf", headers=_auth_header())
+
+        assert response.status_code == 404
+        assert "No analysis results found" in response.json()["detail"]
+
+    def test_pdf_export_unauthenticated_returns_401(self, client):
+        """Request without token returns 401."""
+        response = client.get("/export/NVIDIA/pdf")
+        assert response.status_code == 401
+
+    def test_pdf_export_invalid_token_returns_401(self, client):
+        """Request with invalid token returns 401."""
+        response = client.get(
+            "/export/NVIDIA/pdf",
+            headers={"Authorization": "Bearer invalid.token.here"},
+        )
+        assert response.status_code == 401
+
+    def test_pdf_export_filename_contains_date(self, client, mock_db):
+        """PDF filename includes the analysis date."""
+        mock_db._mock_cursor.fetchall.return_value = _sample_rows()
+
+        response = client.get("/export/NVIDIA/pdf", headers=_auth_header())
+
+        assert response.status_code == 200
+        disposition = response.headers["content-disposition"]
+        assert "nvidia-analysis-" in disposition
+        assert ".pdf" in disposition
+
+    def test_pdf_export_special_chars_in_response(self, client, mock_db):
+        """Analysis text with XML-special chars (<, >, &) does not break PDF generation."""
+        rows = [
+            (
+                "TestCo",
+                "company_analysis",
+                "anthropic/claude-3.5-sonnet",
+                "Revenue > $1B & growth <20% for Q4. Test <html> escaping.",
+                datetime(2025, 6, 15, 10, 0, 0),
+            ),
+        ]
+        mock_db._mock_cursor.fetchall.return_value = rows
+
+        response = client.get("/export/TestCo/pdf", headers=_auth_header())
+
+        assert response.status_code == 200
+        assert response.content[:4] == b"%PDF"
+
+    def test_pdf_export_multiple_analyses(self, client, mock_db):
+        """Multiple analysis records produce a valid PDF with content."""
+        mock_db._mock_cursor.fetchall.return_value = _sample_rows()
+
+        response = client.get("/export/NVIDIA/pdf", headers=_auth_header())
+
+        assert response.status_code == 200
+        # PDF should have reasonable size (more than just headers)
+        assert len(response.content) > 500

tests/test_pagination.py

@@ -0,0 +1,169 @@
+"""Tests for cursor-based pagination on /analyze/batch GET and /jobs endpoints."""
+
+from datetime import datetime, timedelta
+from unittest.mock import Mock, patch
+
+import pytest
+from fastapi.testclient import TestClient
+
+from SPARC.api import app
+
+
+@pytest.fixture
+def client():
+    """Create test client."""
+    return TestClient(app)
+
+
+def _make_analysis_row(id_: int, minutes_ago: int = 0, company: str = "nvidia"):
+    """Create a fake analysis row dict."""
+    ts = datetime.now() - timedelta(minutes=minutes_ago)
+    return {
+        "id": id_,
+        "company_name": company,
+        "analysis_type": "patent_portfolio",
+        "model": "openai/gpt-4o",
+        "response": f"Analysis for {company}",
+        "timestamp": ts,
+    }
+
+
+def _make_job_row(job_id: str, minutes_ago: int = 0, status: str = "completed"):
+    """Create a fake job row dict."""
+    ts = datetime.now() - timedelta(minutes=minutes_ago)
+    return {
+        "job_id": job_id,
+        "status": status,
+        "progress": 100 if status == "completed" else 0,
+        "total_companies": 1,
+        "completed_companies": 1 if status == "completed" else 0,
+        "result": None,
+        "error": None,
+        "created_at": ts,
+    }
+
+
+class TestAnalyzeBatchGetPagination:
+    """Test cursor-based pagination on GET /analyze/batch."""
+
+    @patch("SPARC.api._get_job_db")
+    def test_returns_items_and_no_cursor_when_less_than_limit(self, mock_get_db, client):
+        """When fewer results than limit, next_cursor should be null."""
+        db = Mock()
+        db.list_analyses.return_value = [
+            _make_analysis_row(1, minutes_ago=10),
+            _make_analysis_row(2, minutes_ago=20),
+        ]
+        mock_get_db.return_value = db
+
+        response = client.get("/analyze/batch?limit=10")
+        assert response.status_code == 200
+        data = response.json()
+        assert len(data["items"]) == 2
+        assert data["next_cursor"] is None
+
+    @patch("SPARC.api._get_job_db")
+    def test_returns_cursor_when_more_results_exist(self, mock_get_db, client):
+        """When more results exist than limit, next_cursor should be set."""
+        db = Mock()
+        # Return limit+1 rows to simulate more data
+        rows = [_make_analysis_row(i, minutes_ago=i) for i in range(4)]
+        db.list_analyses.return_value = rows
+        mock_get_db.return_value = db
+
+        response = client.get("/analyze/batch?limit=3")
+        assert response.status_code == 200
+        data = response.json()
+        assert len(data["items"]) == 3
+        assert data["next_cursor"] is not None
+
+    @patch("SPARC.api._get_job_db")
+    def test_cursor_passed_to_db(self, mock_get_db, client):
+        """The cursor query param should be forwarded to the database layer."""
+        db = Mock()
+        db.list_analyses.return_value = []
+        mock_get_db.return_value = db
+
+        client.get("/analyze/batch?cursor=2025-01-01T00:00:00|42")
+        db.list_analyses.assert_called_once()
+        call_kwargs = db.list_analyses.call_args
+        assert call_kwargs.kwargs.get("cursor") == "2025-01-01T00:00:00|42" or \
+            (call_kwargs[1].get("cursor") == "2025-01-01T00:00:00|42" if len(call_kwargs) > 1 else False)
+
+    @patch("SPARC.api._get_job_db")
+    def test_default_limit_is_50(self, mock_get_db, client):
+        """Default limit should be 50."""
+        db = Mock()
+        db.list_analyses.return_value = []
+        mock_get_db.return_value = db
+
+        client.get("/analyze/batch")
+        call_kwargs = db.list_analyses.call_args
+        # The endpoint requests limit+1 from DB, so 51
+        assert 51 in call_kwargs.args or call_kwargs.kwargs.get("limit") == 51
+
+    def test_limit_over_200_rejected(self, client):
+        """Limit > 200 should be rejected with 422."""
+        response = client.get("/analyze/batch?limit=201")
+        assert response.status_code == 422
+
+    def test_limit_zero_rejected(self, client):
+        """Limit < 1 should be rejected with 422."""
+        response = client.get("/analyze/batch?limit=0")
+        assert response.status_code == 422
+
+    @patch("SPARC.api._get_job_db")
+    def test_company_name_filter(self, mock_get_db, client):
+        """The company_name filter should be forwarded to the database."""
+        db = Mock()
+        db.list_analyses.return_value = []
+        mock_get_db.return_value = db
+
+        client.get("/analyze/batch?company_name=intel")
+        call_kwargs = db.list_analyses.call_args
+        assert call_kwargs.kwargs.get("company_name") == "intel" or \
+            "intel" in (call_kwargs.args if call_kwargs.args else [])
+
+    @patch("SPARC.api._get_job_db")
+    def test_empty_result_set(self, mock_get_db, client):
+        """Empty result set returns empty items and null cursor."""
+        db = Mock()
+        db.list_analyses.return_value = []
+        mock_get_db.return_value = db
+
+        response = client.get("/analyze/batch")
+        assert response.status_code == 200
+        data = response.json()
+        assert data["items"] == []
+        assert data["next_cursor"] is None
+
+
+class TestJobsPaginationDefaults:
+    """Test that /jobs endpoint uses updated defaults."""
+
+    @patch("SPARC.api._get_job_db")
+    def test_default_limit_is_50(self, mock_get_db, client):
+        """Default limit should now be 50."""
+        db = Mock()
+        db.list_jobs.return_value = []
+        mock_get_db.return_value = db
+
+        client.get("/jobs")
+        call_kwargs = db.list_jobs.call_args
+        # Endpoint requests limit+1 from DB, so 51
+        assert 51 in call_kwargs.args or call_kwargs.kwargs.get("limit") == 51
+
+    def test_limit_over_200_rejected(self, client):
+        """Limit > 200 should be rejected with 422."""
+        response = client.get("/jobs?limit=201")
+        assert response.status_code == 422
+
+    @patch("SPARC.api._get_job_db")
+    def test_limit_200_accepted(self, mock_get_db, client):
+        """Limit of exactly 200 should be accepted."""
+        db = Mock()
+        db.list_jobs.return_value = []
+        mock_get_db.return_value = db
+
+        response = client.get("/jobs?limit=200")
+        assert response.status_code == 200

tests/test_rate_limit.py

@@ -1,7 +1,8 @@
 """Tests for rate limiting on auth endpoints."""
 
+from unittest.mock import MagicMock, patch
+
 import pytest
-from unittest.mock import Mock, patch, MagicMock
 from fastapi.testclient import TestClient
 
 from SPARC.api import app

tests/test_security.py

@@ -14,6 +14,7 @@ class TestJWTSecretStartupCheck:
         with patch.dict(os.environ, {"APP_ENV": "production"}):
             # Reload config to pick up the new APP_ENV
             import importlib
+
             import SPARC.config
             importlib.reload(SPARC.config)
 
@@ -31,6 +32,7 @@ class TestJWTSecretStartupCheck:
         """Starting with default secret and APP_ENV=development must not raise."""
         with patch.dict(os.environ, {"APP_ENV": "development"}):
             import importlib
+
             import SPARC.config
             importlib.reload(SPARC.config)
 
@@ -46,6 +48,7 @@ class TestJWTSecretStartupCheck:
         """Starting with a custom secret in production must not raise."""
         with patch.dict(os.environ, {"APP_ENV": "production"}):
             import importlib
+
             import SPARC.config
             importlib.reload(SPARC.config)
 
@@ -65,6 +68,7 @@ class TestJWTSecretStartupCheck:
             env.pop("APP_ENV", None)
             with patch.dict(os.environ, env, clear=True):
                 import importlib
+
                 import SPARC.config
                 importlib.reload(SPARC.config)
 
@@ -84,6 +88,7 @@ class TestCORSConfig:
         """When CORS_ORIGINS is unset, defaults to localhost origins."""
         with patch.dict(os.environ, {"CORS_ORIGINS": ""}):
             import importlib
+
             import SPARC.config
             importlib.reload(SPARC.config)
             assert SPARC.config.cors_origins == [
@@ -95,6 +100,7 @@ class TestCORSConfig:
         """Setting CORS_ORIGINS configures allowed origins."""
         with patch.dict(os.environ, {"CORS_ORIGINS": "https://sparc.example.com,https://app.example.com"}):
             import importlib
+
             import SPARC.config
             importlib.reload(SPARC.config)
             assert SPARC.config.cors_origins == [
@@ -109,6 +115,7 @@ class TestCORSConfig:
         """A single origin without comma works correctly."""
         with patch.dict(os.environ, {"CORS_ORIGINS": "https://sparc.example.com"}):
             import importlib
+
             import SPARC.config
             importlib.reload(SPARC.config)
             assert SPARC.config.cors_origins == ["https://sparc.example.com"]

tests/test_storage.py

@@ -0,0 +1,263 @@
+"""Tests for S3/MinIO storage backend in storage.py.
+
+Covers issue #1660:
+- S3StorageBackend read, write, exists, path_for
+- Error handling: NoSuchKey, generic S3 errors, bucket auto-creation
+- get_storage_backend() factory function
+- LocalStorageBackend (basic sanity checks)
+"""
+
+from unittest.mock import MagicMock, patch
+
+import pytest
+
+from SPARC.storage import LocalStorageBackend, S3StorageBackend, get_storage_backend
+
+
+# ---------- S3StorageBackend ----------
+
+class TestS3StorageBackend:
+    """Tests for the S3-compatible storage backend."""
+
+    @pytest.fixture
+    def s3_backend(self):
+        """Create an S3StorageBackend with a fully mocked boto3 client."""
+        with patch.dict("sys.modules", {"boto3": MagicMock()}):
+            import boto3 as mock_boto
+            mock_s3 = MagicMock()
+            mock_boto.client.return_value = mock_s3
+            mock_s3.head_bucket.return_value = {}
+
+            backend = S3StorageBackend(
+                bucket="test-bucket",
+                endpoint_url="http://minio:9000",
+                access_key="minioadmin",
+                secret_key="minioadmin",
+            )
+            # Expose mock for assertions
+            backend._mock_s3 = mock_s3
+            yield backend
+
+    def test_write_puts_object(self, s3_backend):
+        """write() calls put_object with correct bucket, key, and body."""
+        s3_backend.write("US-12345678-B2.pdf", b"PDF content here")
+
+        s3_backend._mock_s3.put_object.assert_called_once_with(
+            Bucket="test-bucket",
+            Key="US-12345678-B2.pdf",
+            Body=b"PDF content here",
+            ContentType="application/pdf",
+        )
+
+    def test_read_returns_body(self, s3_backend):
+        """read() returns the Body content from get_object."""
+        mock_body = MagicMock()
+        mock_body.read.return_value = b"PDF data"
+        s3_backend._mock_s3.get_object.return_value = {"Body": mock_body}
+
+        result = s3_backend.read("US-12345678-B2.pdf")
+
+        assert result == b"PDF data"
+        s3_backend._mock_s3.get_object.assert_called_once_with(
+            Bucket="test-bucket",
+            Key="US-12345678-B2.pdf",
+        )
+
+    def test_read_nosuchkey_raises_file_not_found(self, s3_backend):
+        """read() raises FileNotFoundError when object does not exist."""
+        # Create a NoSuchKey exception class on the mock
+        nosuchkey = type("NoSuchKey", (Exception,), {})
+        s3_backend._mock_s3.exceptions.NoSuchKey = nosuchkey
+        s3_backend._mock_s3.get_object.side_effect = nosuchkey("not found")
+
+        # Reassign s3 to trigger the except branch
+        s3_backend.s3 = s3_backend._mock_s3
+
+        with pytest.raises(FileNotFoundError, match="S3 object not found"):
+            s3_backend.read("missing.pdf")
+
+    def test_read_generic_404_raises_file_not_found(self, s3_backend):
+        """read() handles generic 404 errors from S3-compatible APIs."""
+        nosuchkey = type("NoSuchKey", (Exception,), {})
+        s3_backend._mock_s3.exceptions.NoSuchKey = nosuchkey
+        s3_backend.s3 = s3_backend._mock_s3
+        s3_backend.s3.get_object.side_effect = Exception("An error occurred (404)")
+
+        with pytest.raises(FileNotFoundError, match="S3 object not found"):
+            s3_backend.read("missing.pdf")
+
+    def test_read_other_error_re_raises(self, s3_backend):
+        """read() re-raises non-404 errors."""
+        nosuchkey = type("NoSuchKey", (Exception,), {})
+        s3_backend._mock_s3.exceptions.NoSuchKey = nosuchkey
+        s3_backend.s3 = s3_backend._mock_s3
+        s3_backend.s3.get_object.side_effect = Exception("Internal server error")
+
+        with pytest.raises(Exception, match="Internal server error"):
+            s3_backend.read("some-file.pdf")
+
+    def test_exists_returns_true_for_existing_object(self, s3_backend):
+        """exists() returns True when head_object succeeds with content."""
+        s3_backend._mock_s3.head_object.return_value = {"ContentLength": 1024}
+
+        assert s3_backend.exists("US-12345678-B2.pdf") is True
+
+    def test_exists_returns_false_for_missing_object(self, s3_backend):
+        """exists() returns False when head_object raises an exception."""
+        s3_backend._mock_s3.head_object.side_effect = Exception("Not Found")
+
+        assert s3_backend.exists("missing.pdf") is False
+
+    def test_exists_returns_false_for_zero_length(self, s3_backend):
+        """exists() returns False when object has zero content length."""
+        s3_backend._mock_s3.head_object.return_value = {"ContentLength": 0}
+
+        assert s3_backend.exists("empty.pdf") is False
+
+    def test_path_for_returns_s3_uri(self, s3_backend):
+        """path_for() returns an s3:// URI."""
+        path = s3_backend.path_for("US-12345678-B2.pdf")
+
+        assert path == "s3://test-bucket/US-12345678-B2.pdf"
+
+    def test_constructor_creates_bucket_if_missing(self):
+        """Constructor creates the bucket if head_bucket fails."""
+        with patch.dict("sys.modules", {"boto3": MagicMock()}):
+            import boto3 as mock_boto
+            mock_s3 = MagicMock()
+            mock_boto.client.return_value = mock_s3
+            mock_s3.head_bucket.side_effect = Exception("Bucket not found")
+
+            S3StorageBackend(
+                bucket="new-bucket",
+                endpoint_url="http://minio:9000",
+                access_key="admin",
+                secret_key="admin",
+            )
+
+            mock_s3.create_bucket.assert_called_once_with(Bucket="new-bucket")
+
+    def test_constructor_handles_bucket_creation_failure(self):
+        """Constructor logs warning but does not crash if bucket creation fails."""
+        with patch.dict("sys.modules", {"boto3": MagicMock()}):
+            import boto3 as mock_boto
+            mock_s3 = MagicMock()
+            mock_boto.client.return_value = mock_s3
+            mock_s3.head_bucket.side_effect = Exception("Bucket not found")
+            mock_s3.create_bucket.side_effect = Exception("Permission denied")
+
+            # Should not raise
+            backend = S3StorageBackend(
+                bucket="locked-bucket",
+                endpoint_url="http://minio:9000",
+                access_key="admin",
+                secret_key="admin",
+            )
+            assert backend.bucket == "locked-bucket"
+
+    def test_constructor_passes_endpoint_and_credentials(self):
+        """Constructor passes endpoint_url and credentials to boto3.client."""
+        with patch.dict("sys.modules", {"boto3": MagicMock()}):
+            import boto3 as mock_boto
+            mock_s3 = MagicMock()
+            mock_boto.client.return_value = mock_s3
+
+            S3StorageBackend(
+                bucket="test",
+                endpoint_url="http://minio:9000",
+                access_key="mykey",
+                secret_key="mysecret",
+            )
+
+            mock_boto.client.assert_called_with(
+                "s3",
+                endpoint_url="http://minio:9000",
+                aws_access_key_id="mykey",
+                aws_secret_access_key="mysecret",
+            )
+
+
+# ---------- LocalStorageBackend ----------
+
+class TestLocalStorageBackend:
+    """Basic sanity checks for the local filesystem backend."""
+
+    def test_write_and_read(self, tmp_path):
+        """Write and read round-trip produces identical content."""
+        backend = LocalStorageBackend(base_dir=str(tmp_path))
+        backend.write("test.pdf", b"hello world")
+
+        result = backend.read("test.pdf")
+        assert result == b"hello world"
+
+    def test_read_missing_file_raises(self, tmp_path):
+        """Reading a non-existent file raises FileNotFoundError."""
+        backend = LocalStorageBackend(base_dir=str(tmp_path))
+
+        with pytest.raises(FileNotFoundError):
+            backend.read("nonexistent.pdf")
+
+    def test_exists_true_for_written_file(self, tmp_path):
+        """exists() returns True after writing a file."""
+        backend = LocalStorageBackend(base_dir=str(tmp_path))
+        backend.write("test.pdf", b"data")
+
+        assert backend.exists("test.pdf") is True
+
+    def test_exists_false_for_missing_file(self, tmp_path):
+        """exists() returns False for non-existent file."""
+        backend = LocalStorageBackend(base_dir=str(tmp_path))
+
+        assert backend.exists("missing.pdf") is False
+
+    def test_exists_false_for_empty_file(self, tmp_path):
+        """exists() returns False for zero-length file."""
+        backend = LocalStorageBackend(base_dir=str(tmp_path))
+        backend.write("empty.pdf", b"")
+
+        assert backend.exists("empty.pdf") is False
+
+    def test_path_for_returns_full_path(self, tmp_path):
+        """path_for() returns the full filesystem path."""
+        backend = LocalStorageBackend(base_dir=str(tmp_path))
+        path = backend.path_for("test.pdf")
+
+        assert path == str(tmp_path / "test.pdf")
+
+
+# ---------- get_storage_backend() factory ----------
+
+class TestGetStorageBackend:
+    """Tests for the storage backend factory function."""
+
+    @patch("SPARC.storage.config")
+    def test_returns_local_backend_by_default(self, mock_config):
+        """Default config returns LocalStorageBackend."""
+        mock_config.storage_backend = "local"
+
+        backend = get_storage_backend()
+
+        assert isinstance(backend, LocalStorageBackend)
+
+    @patch("SPARC.storage.config")
+    def test_returns_s3_backend_when_configured(self, mock_config):
+        """Setting storage_backend=s3 returns S3StorageBackend."""
+        mock_config.storage_backend = "s3"
+        mock_config.s3_bucket = "test-bucket"
+        mock_config.s3_endpoint_url = "http://minio:9000"
+        mock_config.s3_access_key = "key"
+        mock_config.s3_secret_key = "secret"
+
+        with patch.dict("sys.modules", {"boto3": MagicMock()}):
+            backend = get_storage_backend()
+
+        assert isinstance(backend, S3StorageBackend)
+
+    @patch("SPARC.storage.config")
+    def test_case_insensitive_backend_selection(self, mock_config):
+        """Backend selection is case-insensitive."""
+        mock_config.storage_backend = "LOCAL"
+
+        backend = get_storage_backend()
+
+        assert isinstance(backend, LocalStorageBackend)

tests/test_tracked_companies.py

@@ -0,0 +1,387 @@
+"""Tests for tracked company admin endpoints and scheduler integration.
+
+Covers issue #1656:
+- GET /admin/tracked (list tracked companies)
+- POST /admin/tracked (add a tracked company)
+- DELETE /admin/tracked/{company_name} (remove a tracked company)
+- GET /admin/alerts (list alerts)
+- scheduler.run_scheduled_analysis() integration
+
+All tests mock the database layer and use JWT auth fixtures.
+"""
+
+from datetime import datetime, timezone
+from unittest.mock import MagicMock, patch, call
+
+import pytest
+from fastapi.testclient import TestClient
+
+from SPARC.api import app
+from SPARC.auth import create_access_token
+
+
+@pytest.fixture
+def client():
+    """Create test client."""
+    return TestClient(app)
+
+
+@pytest.fixture(autouse=True)
+def mock_db():
+    """Mock the database client used by admin and auth endpoints."""
+    db = MagicMock()
+
+    # Default admin user for auth
+    db.get_user_by_id.return_value = {
+        "id": 1,
+        "email": "admin@test.com",
+        "role": "admin",
+        "created_at": datetime(2025, 1, 1, tzinfo=timezone.utc),
+    }
+
+    with patch("SPARC.api.get_db_client", return_value=db), \
+         patch("SPARC.auth.get_db_client", return_value=db):
+        yield db
+
+
+def _admin_header():
+    """Create an Authorization header with a valid admin access token."""
+    token = create_access_token(1, "admin@test.com", "admin")
+    return {"Authorization": f"Bearer {token}"}
+
+
+def _user_header():
+    """Create an Authorization header with a regular user access token."""
+    token = create_access_token(2, "user@test.com", "user")
+    return {"Authorization": f"Bearer {token}"}
+
+
+# ---------- GET /admin/tracked ----------
+
+class TestListTrackedCompanies:
+    """GET /admin/tracked"""
+
+    def test_list_tracked_returns_companies(self, client, mock_db):
+        """Admin can list tracked companies."""
+        mock_db.list_tracked_companies.return_value = [
+            {"company_name": "NVIDIA", "last_patent_count": 120, "last_analyzed": "2025-06-15"},
+            {"company_name": "AMD", "last_patent_count": 80, "last_analyzed": "2025-06-14"},
+        ]
+
+        response = client.get("/admin/tracked", headers=_admin_header())
+
+        assert response.status_code == 200
+        data = response.json()
+        assert len(data) == 2
+        assert data[0]["company_name"] == "NVIDIA"
+
+    def test_list_tracked_empty(self, client, mock_db):
+        """Returns empty list when no companies are tracked."""
+        mock_db.list_tracked_companies.return_value = []
+
+        response = client.get("/admin/tracked", headers=_admin_header())
+
+        assert response.status_code == 200
+        assert response.json() == []
+
+    def test_list_tracked_requires_admin(self, client, mock_db):
+        """Regular user cannot access tracked companies list."""
+        mock_db.get_user_by_id.return_value = {
+            "id": 2,
+            "email": "user@test.com",
+            "role": "user",
+            "created_at": datetime(2025, 1, 1, tzinfo=timezone.utc),
+        }
+
+        response = client.get("/admin/tracked", headers=_user_header())
+
+        assert response.status_code == 403
+
+    def test_list_tracked_unauthenticated(self, client):
+        """Unauthenticated request returns 401."""
+        response = client.get("/admin/tracked")
+        assert response.status_code == 401
+
+
+# ---------- POST /admin/tracked ----------
+
+class TestAddTrackedCompany:
+    """POST /admin/tracked"""
+
+    def test_add_tracked_company_success(self, client, mock_db):
+        """Admin can add a company to tracking."""
+        mock_db.add_tracked_company.return_value = {
+            "company_name": "Intel",
+            "last_patent_count": 0,
+            "last_analyzed": None,
+        }
+
+        response = client.post(
+            "/admin/tracked",
+            json={"company_name": "Intel"},
+            headers=_admin_header(),
+        )
+
+        assert response.status_code == 200
+        data = response.json()
+        assert data["company_name"] == "Intel"
+        mock_db.add_tracked_company.assert_called_once_with("Intel")
+
+    def test_add_duplicate_returns_409(self, client, mock_db):
+        """Adding an already-tracked company returns 409."""
+        mock_db.add_tracked_company.return_value = None
+
+        response = client.post(
+            "/admin/tracked",
+            json={"company_name": "NVIDIA"},
+            headers=_admin_header(),
+        )
+
+        assert response.status_code == 409
+        assert "already tracked" in response.json()["detail"].lower()
+
+    def test_add_tracked_requires_admin(self, client, mock_db):
+        """Regular user cannot add tracked companies."""
+        mock_db.get_user_by_id.return_value = {
+            "id": 2,
+            "email": "user@test.com",
+            "role": "user",
+            "created_at": datetime(2025, 1, 1, tzinfo=timezone.utc),
+        }
+
+        response = client.post(
+            "/admin/tracked",
+            json={"company_name": "Intel"},
+            headers=_user_header(),
+        )
+
+        assert response.status_code == 403
+
+    def test_add_tracked_empty_name_rejected(self, client):
+        """Empty company name is rejected by validation."""
+        response = client.post(
+            "/admin/tracked",
+            json={"company_name": ""},
+            headers=_admin_header(),
+        )
+
+        assert response.status_code == 422  # Pydantic validation error
+
+
+# ---------- DELETE /admin/tracked/{company_name} ----------
+
+class TestRemoveTrackedCompany:
+    """DELETE /admin/tracked/{company_name}"""
+
+    def test_remove_tracked_company_success(self, client, mock_db):
+        """Admin can remove a tracked company."""
+        mock_db.remove_tracked_company.return_value = True
+
+        response = client.delete(
+            "/admin/tracked/NVIDIA",
+            headers=_admin_header(),
+        )
+
+        assert response.status_code == 200
+        assert "Stopped tracking" in response.json()["message"]
+        mock_db.remove_tracked_company.assert_called_once_with("NVIDIA")
+
+    def test_remove_nonexistent_returns_404(self, client, mock_db):
+        """Removing a non-tracked company returns 404."""
+        mock_db.remove_tracked_company.return_value = False
+
+        response = client.delete(
+            "/admin/tracked/UnknownCorp",
+            headers=_admin_header(),
+        )
+
+        assert response.status_code == 404
+        assert "not found" in response.json()["detail"].lower()
+
+    def test_remove_tracked_requires_admin(self, client, mock_db):
+        """Regular user cannot remove tracked companies."""
+        mock_db.get_user_by_id.return_value = {
+            "id": 2,
+            "email": "user@test.com",
+            "role": "user",
+            "created_at": datetime(2025, 1, 1, tzinfo=timezone.utc),
+        }
+
+        response = client.delete(
+            "/admin/tracked/NVIDIA",
+            headers=_user_header(),
+        )
+
+        assert response.status_code == 403
+
+
+# ---------- GET /admin/alerts ----------
+
+class TestListAlerts:
+    """GET /admin/alerts"""
+
+    def test_list_alerts_returns_data(self, client, mock_db):
+        """Admin can list alerts."""
+        mock_db.list_alerts.return_value = [
+            {
+                "id": 1,
+                "company_name": "NVIDIA",
+                "alert_type": "patent_count_change",
+                "message": "Patent count increased by 25%",
+                "created_at": "2025-06-15T10:00:00Z",
+            },
+        ]
+
+        response = client.get("/admin/alerts", headers=_admin_header())
+
+        assert response.status_code == 200
+        data = response.json()
+        assert len(data) == 1
+        assert data[0]["alert_type"] == "patent_count_change"
+
+    def test_list_alerts_with_limit(self, client, mock_db):
+        """Custom limit parameter is passed to the database."""
+        mock_db.list_alerts.return_value = []
+
+        response = client.get("/admin/alerts?limit=10", headers=_admin_header())
+
+        assert response.status_code == 200
+        mock_db.list_alerts.assert_called_once_with(limit=10)
+
+    def test_list_alerts_requires_admin(self, client, mock_db):
+        """Regular user cannot access alerts."""
+        mock_db.get_user_by_id.return_value = {
+            "id": 2,
+            "email": "user@test.com",
+            "role": "user",
+            "created_at": datetime(2025, 1, 1, tzinfo=timezone.utc),
+        }
+
+        response = client.get("/admin/alerts", headers=_user_header())
+
+        assert response.status_code == 403
+
+
+# ---------- Scheduler integration ----------
+
+class TestSchedulerIntegration:
+    """Tests for scheduler.run_scheduled_analysis()."""
+
+    def test_no_tracked_companies_skips_analysis(self):
+        """Scheduler does nothing when no companies are tracked."""
+        mock_db = MagicMock()
+        mock_db.list_tracked_companies.return_value = []
+
+        with patch("SPARC.scheduler.get_db_client", return_value=mock_db), \
+             patch("SPARC.scheduler.CompanyAnalyzer") as mock_analyzer_cls:
+            from SPARC.scheduler import run_scheduled_analysis
+            run_scheduled_analysis()
+
+        mock_analyzer_cls.assert_not_called()
+
+    def test_scheduler_analyzes_each_tracked_company(self):
+        """Scheduler runs analysis for every tracked company."""
+        mock_db = MagicMock()
+        mock_db.list_tracked_companies.return_value = [
+            {"company_name": "NVIDIA", "last_patent_count": 100},
+            {"company_name": "AMD", "last_patent_count": 50},
+        ]
+
+        mock_result_nvidia = MagicMock(success=True, patent_count=110)
+        mock_result_amd = MagicMock(success=True, patent_count=55)
+        mock_analyzer = MagicMock()
+        mock_analyzer._analyze_company_safe.side_effect = [mock_result_nvidia, mock_result_amd]
+
+        with patch("SPARC.scheduler.get_db_client", return_value=mock_db), \
+             patch("SPARC.scheduler.CompanyAnalyzer", return_value=mock_analyzer):
+            from SPARC.scheduler import run_scheduled_analysis
+            run_scheduled_analysis()
+
+        assert mock_analyzer._analyze_company_safe.call_count == 2
+        mock_db.update_tracked_company.assert_any_call("NVIDIA", 110)
+        mock_db.update_tracked_company.assert_any_call("AMD", 55)
+
+    def test_scheduler_triggers_alert_on_significant_change(self):
+        """Scheduler stores an alert when patent count changes significantly."""
+        mock_db = MagicMock()
+        mock_db.list_tracked_companies.return_value = [
+            {"company_name": "Tesla", "last_patent_count": 100},
+        ]
+
+        mock_result = MagicMock(success=True, patent_count=130)  # 30% increase
+        mock_analyzer = MagicMock()
+        mock_analyzer._analyze_company_safe.return_value = mock_result
+
+        with patch("SPARC.scheduler.get_db_client", return_value=mock_db), \
+             patch("SPARC.scheduler.CompanyAnalyzer", return_value=mock_analyzer):
+            from SPARC.scheduler import run_scheduled_analysis
+            run_scheduled_analysis()
+
+        mock_db.store_alert.assert_called_once()
+        alert_kwargs = mock_db.store_alert.call_args
+        assert alert_kwargs[1]["company_name"] == "Tesla"
+        assert alert_kwargs[1]["alert_type"] == "patent_count_change"
+        assert alert_kwargs[1]["old_value"] == 100
+        assert alert_kwargs[1]["new_value"] == 130
+
+    def test_scheduler_no_alert_for_small_change(self):
+        """Scheduler does not alert when change is below threshold."""
+        mock_db = MagicMock()
+        mock_db.list_tracked_companies.return_value = [
+            {"company_name": "Intel", "last_patent_count": 100},
+        ]
+
+        mock_result = MagicMock(success=True, patent_count=105)  # 5% increase
+        mock_analyzer = MagicMock()
+        mock_analyzer._analyze_company_safe.return_value = mock_result
+
+        with patch("SPARC.scheduler.get_db_client", return_value=mock_db), \
+             patch("SPARC.scheduler.CompanyAnalyzer", return_value=mock_analyzer):
+            from SPARC.scheduler import run_scheduled_analysis
+            run_scheduled_analysis()
+
+        mock_db.store_alert.assert_not_called()
+
+    def test_scheduler_handles_analysis_failure(self):
+        """Scheduler continues when one company fails analysis."""
+        mock_db = MagicMock()
+        mock_db.list_tracked_companies.return_value = [
+            {"company_name": "FailCo", "last_patent_count": 50},
+            {"company_name": "SuccessCo", "last_patent_count": 30},
+        ]
+
+        mock_fail_result = MagicMock(success=False, error="API timeout")
+        mock_ok_result = MagicMock(success=True, patent_count=35)
+        mock_analyzer = MagicMock()
+        mock_analyzer._analyze_company_safe.side_effect = [mock_fail_result, mock_ok_result]
+
+        with patch("SPARC.scheduler.get_db_client", return_value=mock_db), \
+             patch("SPARC.scheduler.CompanyAnalyzer", return_value=mock_analyzer):
+            from SPARC.scheduler import run_scheduled_analysis
+            run_scheduled_analysis()
+
+        # FailCo should not get updated, SuccessCo should
+        mock_db.update_tracked_company.assert_called_once_with("SuccessCo", 35)
+
+    def test_scheduler_handles_exception_in_analysis(self):
+        """Scheduler continues even when analysis raises an exception."""
+        mock_db = MagicMock()
+        mock_db.list_tracked_companies.return_value = [
+            {"company_name": "CrashCo", "last_patent_count": 10},
+            {"company_name": "OKCo", "last_patent_count": 20},
+        ]
+
+        mock_ok_result = MagicMock(success=True, patent_count=22)
+        mock_analyzer = MagicMock()
+        mock_analyzer._analyze_company_safe.side_effect = [
+            RuntimeError("unexpected error"),
+            mock_ok_result,
+        ]
+
+        with patch("SPARC.scheduler.get_db_client", return_value=mock_db), \
+             patch("SPARC.scheduler.CompanyAnalyzer", return_value=mock_analyzer):
+            from SPARC.scheduler import run_scheduled_analysis
+            run_scheduled_analysis()
+
+        # OKCo should still be processed
+        mock_db.update_tracked_company.assert_called_once_with("OKCo", 22)

tests/test_webhooks.py

@@ -0,0 +1,280 @@
+"""Tests for webhook notification system: retry logic and Slack/Discord payload format.
+
+Covers issue #1657:
+- Retry logic with exponential backoff in _send_with_retry
+- Slack/Discord payload formatting in _build_payload
+- Generic HTTP POST payload formatting
+- notify() dispatching to multiple URLs
+- notify_job_completed() and notify_alert() convenience helpers
+"""
+
+from datetime import datetime
+from unittest.mock import MagicMock, patch, call
+
+import pytest
+import requests
+
+from SPARC.webhooks import (
+    MAX_RETRIES,
+    _build_payload,
+    _is_slack_url,
+    _send_with_retry,
+    notify,
+    notify_alert,
+    notify_job_completed,
+)
+
+
+class TestIsSlackUrl:
+    """Tests for Slack/Discord URL detection."""
+
+    def test_slack_webhook_url(self):
+        assert _is_slack_url("https://hooks.slack.com/services/T00/B00/xxx") is True
+
+    def test_discord_webhook_url(self):
+        assert _is_slack_url("https://discord.com/api/webhooks/123/abc") is True
+
+    def test_generic_url(self):
+        assert _is_slack_url("https://example.com/webhook") is False
+
+    def test_empty_url(self):
+        assert _is_slack_url("") is False
+
+
+class TestBuildPayload:
+    """Tests for payload construction."""
+
+    def test_generic_payload_structure(self):
+        """Generic payload includes event type, timestamp, and data."""
+        payload = _build_payload("job_completed", {"job_id": "abc123"})
+
+        assert payload["event"] == "job_completed"
+        assert payload["job_id"] == "abc123"
+        assert "timestamp" in payload
+        # Timestamp should be ISO format ending with Z
+        assert payload["timestamp"].endswith("Z")
+
+    def test_slack_payload_wraps_in_text(self):
+        """Slack payload wraps content in a 'text' field."""
+        payload = _build_payload("patent_alert", {"company_name": "NVIDIA"}, slack=True)
+
+        assert "text" in payload
+        assert "patent_alert" in payload["text"]
+        assert "NVIDIA" in payload["text"]
+        # Slack payload should NOT have the event/timestamp at top level
+        assert "event" not in payload
+        assert "timestamp" not in payload
+
+    def test_generic_payload_does_not_have_text_field(self):
+        """Non-Slack payload does not wrap in text."""
+        payload = _build_payload("job_completed", {"status": "done"})
+
+        assert "text" not in payload
+        assert payload["status"] == "done"
+
+    def test_slack_payload_contains_bold_header(self):
+        """Slack payload starts with bold event header using Slack markdown."""
+        payload = _build_payload("job_completed", {"count": 5}, slack=True)
+
+        assert payload["text"].startswith("*[SPARC] job_completed*")
+
+    def test_payload_merges_all_data_keys(self):
+        """All data keys are included in the generic payload."""
+        data = {"key1": "val1", "key2": 42, "key3": True}
+        payload = _build_payload("test_event", data)
+
+        assert payload["key1"] == "val1"
+        assert payload["key2"] == 42
+        assert payload["key3"] is True
+
+
+class TestSendWithRetry:
+    """Tests for retry logic in _send_with_retry."""
+
+    @patch("SPARC.webhooks.time.sleep")
+    @patch("SPARC.webhooks.requests.post")
+    def test_success_on_first_attempt(self, mock_post, mock_sleep):
+        """Successful delivery on first attempt, no retries."""
+        mock_post.return_value = MagicMock(status_code=200)
+
+        result = _send_with_retry("https://example.com/hook", {"event": "test"})
+
+        assert result is True
+        mock_post.assert_called_once()
+        mock_sleep.assert_not_called()
+
+    @patch("SPARC.webhooks.time.sleep")
+    @patch("SPARC.webhooks.requests.post")
+    def test_success_on_second_attempt(self, mock_post, mock_sleep):
+        """Fails first, succeeds on retry."""
+        mock_post.side_effect = [
+            MagicMock(status_code=500),
+            MagicMock(status_code=200),
+        ]
+
+        result = _send_with_retry("https://example.com/hook", {"event": "test"})
+
+        assert result is True
+        assert mock_post.call_count == 2
+        mock_sleep.assert_called_once()
+
+    @patch("SPARC.webhooks.time.sleep")
+    @patch("SPARC.webhooks.requests.post")
+    def test_all_retries_exhausted(self, mock_post, mock_sleep):
+        """Returns False after all retries fail."""
+        mock_post.return_value = MagicMock(status_code=500)
+
+        result = _send_with_retry("https://example.com/hook", {"event": "test"})
+
+        assert result is False
+        assert mock_post.call_count == MAX_RETRIES
+        assert mock_sleep.call_count == MAX_RETRIES - 1
+
+    @patch("SPARC.webhooks.time.sleep")
+    @patch("SPARC.webhooks.requests.post")
+    def test_exponential_backoff_timing(self, mock_post, mock_sleep):
+        """Backoff wait times follow exponential pattern (2^attempt)."""
+        mock_post.return_value = MagicMock(status_code=500)
+
+        _send_with_retry("https://example.com/hook", {"event": "test"})
+
+        # With BACKOFF_BASE=2: attempt 1 -> sleep(2), attempt 2 -> sleep(4)
+        expected_waits = [call(2 ** i) for i in range(1, MAX_RETRIES)]
+        assert mock_sleep.call_args_list == expected_waits
+
+    @patch("SPARC.webhooks.time.sleep")
+    @patch("SPARC.webhooks.requests.post")
+    def test_network_error_triggers_retry(self, mock_post, mock_sleep):
+        """Network exceptions trigger retry, not immediate failure."""
+        mock_post.side_effect = [
+            requests.ConnectionError("Connection refused"),
+            MagicMock(status_code=200),
+        ]
+
+        result = _send_with_retry("https://example.com/hook", {"event": "test"})
+
+        assert result is True
+        assert mock_post.call_count == 2
+
+    @patch("SPARC.webhooks.time.sleep")
+    @patch("SPARC.webhooks.requests.post")
+    def test_timeout_error_triggers_retry(self, mock_post, mock_sleep):
+        """Timeout exceptions trigger retry."""
+        mock_post.side_effect = [
+            requests.Timeout("Request timed out"),
+            MagicMock(status_code=200),
+        ]
+
+        result = _send_with_retry("https://example.com/hook", {"event": "test"})
+
+        assert result is True
+        assert mock_post.call_count == 2
+
+    @patch("SPARC.webhooks.time.sleep")
+    @patch("SPARC.webhooks.requests.post")
+    def test_2xx_status_codes_accepted(self, mock_post, mock_sleep):
+        """Any 2xx status code is treated as success."""
+        mock_post.return_value = MagicMock(status_code=204)
+
+        result = _send_with_retry("https://example.com/hook", {"event": "test"})
+
+        assert result is True
+        mock_post.assert_called_once()
+
+    @patch("SPARC.webhooks.time.sleep")
+    @patch("SPARC.webhooks.requests.post")
+    def test_posts_json_payload(self, mock_post, mock_sleep):
+        """Payload is sent as JSON with correct timeout."""
+        mock_post.return_value = MagicMock(status_code=200)
+        payload = {"event": "test", "data": "value"}
+
+        _send_with_retry("https://example.com/hook", payload)
+
+        mock_post.assert_called_once_with(
+            "https://example.com/hook", json=payload, timeout=10
+        )
+
+
+class TestNotify:
+    """Tests for the notify() dispatcher."""
+
+    @patch("SPARC.webhooks._send_with_retry")
+    @patch("SPARC.webhooks.WEBHOOK_URLS", ["https://example.com/hook1", "https://example.com/hook2"])
+    def test_dispatches_to_all_urls(self, mock_send):
+        """notify() sends to every configured webhook URL."""
+        mock_send.return_value = True
+
+        notify("job_completed", {"job_id": "test123"})
+
+        assert mock_send.call_count == 2
+
+    @patch("SPARC.webhooks._send_with_retry")
+    @patch("SPARC.webhooks.WEBHOOK_URLS", [])
+    def test_no_urls_configured_returns_immediately(self, mock_send):
+        """No-op when no webhook URLs are configured."""
+        notify("job_completed", {"job_id": "test123"})
+
+        mock_send.assert_not_called()
+
+    @patch("SPARC.webhooks._send_with_retry")
+    @patch("SPARC.webhooks.WEBHOOK_URLS", [
+        "https://hooks.slack.com/services/T00/B00/xxx",
+        "https://example.com/generic",
+    ])
+    def test_slack_url_gets_slack_payload(self, mock_send):
+        """Slack URLs receive Slack-formatted payloads, others get generic."""
+        mock_send.return_value = True
+
+        notify("test_event", {"key": "val"})
+
+        # First call (Slack URL) should have "text" key
+        slack_payload = mock_send.call_args_list[0][0][1]
+        assert "text" in slack_payload
+
+        # Second call (generic URL) should have "event" key
+        generic_payload = mock_send.call_args_list[1][0][1]
+        assert "event" in generic_payload
+        assert generic_payload["event"] == "test_event"
+
+
+class TestNotifyJobCompleted:
+    """Tests for notify_job_completed() convenience function."""
+
+    @patch("SPARC.webhooks.notify")
+    def test_sends_correct_event_and_data(self, mock_notify):
+        """Job completion sends proper event type and summary."""
+        notify_job_completed(
+            job_id="batch-001",
+            status="completed",
+            total_companies=10,
+            successful=8,
+            failed=2,
+        )
+
+        mock_notify.assert_called_once()
+        event, data = mock_notify.call_args[0]
+        assert event == "job_completed"
+        assert data["job_id"] == "batch-001"
+        assert data["successful"] == 8
+        assert data["failed"] == 2
+        assert "8/10" in data["summary"]
+
+
+class TestNotifyAlert:
+    """Tests for notify_alert() convenience function."""
+
+    @patch("SPARC.webhooks.notify")
+    def test_sends_correct_event_and_data(self, mock_notify):
+        """Alert notification sends patent_alert event type."""
+        notify_alert(
+            company_name="NVIDIA",
+            alert_type="patent_count_change",
+            message="Patent count increased by 30%",
+        )
+
+        mock_notify.assert_called_once()
+        event, data = mock_notify.call_args[0]
+        assert event == "patent_alert"
+        assert data["company_name"] == "NVIDIA"
+        assert data["alert_type"] == "patent_count_change"
+        assert "30%" in data["message"]